Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00479 ATGCCAGTGGCTGCTTCCGCCATTTACTTCCTCAATCTCCGAGGGGATGTTCTCATTAATCGTCTCTACCGTGACGATGTCGGCGGAAATATGGTGGATGCCTTCCGAACGCATATAATGCAAACAAAAGAACTTGGCACGTGTCCGGTGAGGCAAATTGGTGACATGCCAGTGGCTGCTTCCGCCATTTACTTCCTCAATCTCCGAGGGGATGTTCTCATTAATCGTCTCTACCGTGACGATGTCGGCGGAAATATGGTGGATGCCTTCCGAACGCATATAATGCAAACAAAAGAACTTGGCACGTGTCCGGTGAGGCAAATTGGTGGTTGCTCTTTCTTTTACATGAGAATTAGCAATGTATACATTGTGATTGTTGTAAGCAGCAATGCAAATGTAGCTTGTGCGTTCAAATTCGTGGTTGAGGCTGTTGCACTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCAATTCGAAACAATTTTGTTCTTATTTACGAGCTTTTGGATGAAATAATGGATTTCGGTTACCCGCAAAACCTCTCGCCTGAAATTCTAAAACTATATATCACTCAAGAAGGAGTTCGCTCGCCATTCTCTTCCAAGGTCTTTTTGGATATTGTTGAAAGTGTAAACCTTCTTATGTCTTCAAAAGGTAGCGTTCTACGTTGTGACGTTACTGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATCTAAAGTTGGGTTTAAATGATAAGATTGGACTTGAGAAAGAGTCGCAAATGAAGTCCCGTCCAAATAAGAGTGGTAAAACAATTGAGCTTGATGATGTTACTTTTCATCAATGTGTAAATTTGACGAGGTTTAACTCGGAGAAGACGGTCAGCTTTGTGCCACCCGATGGCGAATTTGAATTGATGAAATATCGTATTACTGAGGGTGTTAATCTTCCATTTCGAGTACTCCCAACAATTAAGGAGCTTGGTAGGACTCATATGGAAGTTAATGTTAAGGTGAAGAGTGTCTTCGGTGCGAAAATGTTTGCTCTTGGCGTGGTCATTAAAATTCCCGTTCCAAAGCAGACAGCTAAAACTAGTTTCCAAGTGACATCCGGTCGAGCCAAGTACAATGCCTCGATCGACTGCATTGTGTGGAAGATCAGAAAATTCCCTGGACAAACGGAACCAACCATGAGCGCAGAAGTCGAGCTGATTTCTACAATAACTGAAAGGAAGGCTTGGACACGGCCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACGGCATCTGGTTTACGAGTTCGTTTCCTAAAGGTGTGGGAGAAGAGTGGTTACAACACAGTCGAATGGGTTCGTTACATAACTAAAGCTGGATCGTACGAGATCCGATGTTAG 1392 43.25 MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGDMPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQMKSRPNKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTHMEVNVKVKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCIVWKIRKFPGQTEPTMSAEVELISTITERKAWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5700837 5710039 - CmoCh19G004790.1 Cmo19g00479 403639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00479 463 Gene3D Mu homology domain, subdomain B 204 458 - -
Cmo19g00479 463 CDD AP-2_Mu2_Cterm 205 462 IPR043512 -
Cmo19g00479 463 PANTHER AP COMPLEX SUBUNIT MU 3 55 - -
Cmo19g00479 463 PANTHER AP COMPLEX SUBUNIT MU 204 463 - -
Cmo19g00479 463 PRINTS Clathrin coat assembly protein signature 342 357 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cmo19g00479 463 PRINTS Clathrin coat assembly protein signature 15 35 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cmo19g00479 463 PRINTS Clathrin coat assembly protein signature 273 300 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cmo19g00479 463 PRINTS Clathrin coat assembly protein signature 382 393 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cmo19g00479 463 PIRSF AP_complex_mu 59 203 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cmo19g00479 463 PIRSF AP_complex_mu 4 52 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cmo19g00479 463 PIRSF AP_complex_mu 198 463 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cmo19g00479 463 Gene3D - 60 200 - -
Cmo19g00479 463 PANTHER AP COMPLEX SUBUNIT MU 58 204 - -
Cmo19g00479 463 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 204 462 IPR036168 -
Cmo19g00479 463 Pfam Adaptor complexes medium subunit family 204 463 IPR028565 -
Cmo19g00479 463 PANTHER BNAA02G36830D PROTEIN 58 204 - -
Cmo19g00479 463 PANTHER BNAA02G36830D PROTEIN 204 463 - -
Cmo19g00479 463 ProSiteProfiles Mu homology domain (MHD) profile. 202 462 IPR028565 -
Cmo19g00479 463 SUPERFAMILY SNARE-like 61 197 IPR011012 -
Cmo19g00479 463 Gene3D Mu homology domain, subdomain B 315 462 - -
Cmo19g00479 463 Gene3D - 3 59 - -
Cmo19g00479 463 CDD AP2_Mu_N 61 199 IPR043532 -
Cmo19g00479 463 PANTHER BNAA02G36830D PROTEIN 3 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00479 K11826 AP2M1; AP-2 complex subunit mu-1 - csv:101220779 772.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01840 Cmo-Chr4:9250084 Cmo19g00479 Cmo-Chr19:5700837 5.22E-108 dispersed
Cmo09g00131 Cmo-Chr9:604317 Cmo19g00479 Cmo-Chr19:5700837 2.84E-70 dispersed
Cmo18g00782 Cmo-Chr18:9356963 Cmo19g00479 Cmo-Chr19:5700837 1.30E-64 dispersed
Cmo19g00479 Cmo-Chr19:5700837 Cmo02g01648 Cmo-Chr2:9496841 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g638 Blo02g00997 . . . Bpe05g00534 . . . . . . . . . . . Cpe05g00188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00385 . . . Cmo19g00479 . . . . . Cpe15g00360 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004704 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00479 Cmo_Chr19 FPKM 14.280627 15.59672 17.340624 17.429768 32.335396 28.09878 32.964855 19.924917 19.545036 20.327974