Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00482 ATGGACATCTCCTTGGCGGCAATGGACGACTCTGCAACCAGTCCCGTCAAGGCCTTGGCTTCGTTTCTAATTCGCCGCCACTCCGATCAGCTTCTTTCCATTGCTCATTCCCCTGATCCTAAGCTCCATTACCCTCTATTCGTGGAATTCGCAGAGCTGATGGACGACGATCCACCTCTTGCTCGTCTTGTTTTCTCCCATCCGACCGAGTACTTGCGTATTTTTGACGATGCAGCTGTTTGGGCGCATAAGATCACTTTGGGTGATTCGAAAGGTTGTATAAATGGAATTAAGAAAGATTTCATCCATGTTCGCATTAATGTCGCCGGATCCCCTCTGGAATGGCCTGAGACTTCTCCAAGTATTGGGTCTATCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACGGTAATCAGATCTGGGGCAATTAAGATGTATGAGGGGGAGAGGTGGTACATTTGCCGGAGATGCAAGCACAAGTTCCCAGTATATCCCGAGCTGGAAGCCAGAAACTCAATACAGTTACCATCATTTTGTCCCTCTCAGAGGGCAAAACCATGTGAAGGGAAAAGTTTTGAGTGCTTGGAAGGTTCTGTAGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGGGTGTGGGATCCATTCCTCGTGCCATTCTAGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGATGAAGAATCTGCCTTTAAGTTATTGATTCCTCACTATTTCCTTCTCAATGGGGATGGGGGTTTGATTATTGGGGCAGACGATGTTATTGTTACAGGAGTATTGAGTGCAAAGTGGTCCCCAGACATCAAAGATGTACGGTGTGACCTTGATCCAATGCTAATTGCTAATCATGTGAGAAGAACCAATGAACTGAAGGCAGAGGTTGACATCCCTGATGACATAATTATGAATTTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATGTATCTGGAACCAAAGTTCGAGGAGAATCTCATCTATTGTTGGTTGGCGATCCTGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAACTGAGCAACCGGGCTGTTATTACCACTGGATTAGGAAGCACTAGCGCTGGACTAACTGTTGCTGCTGTCAAGGATGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTACTGGCTGATGGAGGACTTTGTTGTATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACGATCCATGAAGCAATGGAGCAACAGACTATAAGTGTCGCAAAGCGACAGTCGTTTCTGTGCTCTCTTCTTCAGCTTCCTTATCAACTGATGCATCAGGAGTTACAAAGTCAGGTGGGTTCTCAACTTTGGCCTCTTGTGAAGAAAGAGGAGGGTCGGCTGGCTGGTCTTGTAACAACTCTCAGTACTAGAACGATAGTATTTGGCGCAACAAATCCTAAAGGACATTATGACCCTGAACAACCCTCACAAGGAAAGCTCATCCTCCTGCTGCTTGAACATGTATTTGAATCCCTTACAAATACCAAAAATCCCGAATGGGATGCAGTTGTCTCATCACATATTCTCTCCGAGTGCCAACAAGAAAAGGGAAAGCGTGATAATGATCTTTCAAGTAACTGGCCTCTTACTATGCTTCGAAGATACCTCCAATTTGTAAAAGGATACTTCAGACCGGTCCTGACCAAGGAGGCAGAACAAATTATTTCAAGATACTATCAGCTTCAAAGAAGATCAGCAATGGATAATGCAGCCAGAACAACAGTCCGCATGCTCGAAAGTTTGATACGTTTAGCACAAGCACATGCACGGCTCATGTTTAGAAATGAGGTTACTCGGCTCGATGCCATTACGGCTATATTGTGCATCGAATCATCCATGACGACCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCACTCCAACTTTACCGAGAACCCAGATGAGGAATTCTCTGTTATTCGGTTCCTGAGGTTACCGTGA 2076 45.33 MDISLAAMDDSATSPVKALASFLIRRHSDQLLSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSHPTEYLRIFDDAAVWAHKITLGDSKGCINGIKKDFIHVRINVAGSPLEWPETSPSIGSIRVKHRGVLLTLKGTVIRSGAIKMYEGERWYICRRCKHKFPVYPELEARNSIQLPSFCPSQRAKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRAILVILKDDLVDLVKAGDEESAFKLLIPHYFLLNGDGGLIIGADDVIVTGVLSAKWSPDIKDVRCDLDPMLIANHVRRTNELKAEVDIPDDIIMNFRQFWSDFKDTPLKVALTLIGGVQHVDVSGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKRQSFLCSLLQLPYQLMHQELQSQVGSQLWPLVKKEEGRLAGLVTTLSTRTIVFGATNPKGHYDPEQPSQGKLILLLLEHVFESLTNTKNPEWDAVVSSHILSECQQEKGKRDNDLSSNWPLTMLRRYLQFVKGYFRPVLTKEAEQIISRYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSALVDSVGNALHSNFTENPDEEFSVIRFLRLP 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5739138 5769092 + CmoCh19G004820.1 Cmo19g00482 403642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00482 691 PANTHER DNA HELICASE MCM9 43 452 - -
Cmo19g00482 691 Pfam MCM AAA-lid domain 575 656 IPR041562 -
Cmo19g00482 691 SMART AAA_5 356 543 IPR003593 -
Cmo19g00482 691 Gene3D - 296 662 IPR027417 -
Cmo19g00482 691 SUPERFAMILY Nucleic acid-binding proteins 43 244 IPR012340 -
Cmo19g00482 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 660 IPR027417 -
Cmo19g00482 691 SMART mcm 118 658 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo19g00482 691 Pfam MCM OB domain 124 245 IPR033762 -
Cmo19g00482 691 PANTHER DNA HELICASE MCM9 492 682 - -
Cmo19g00482 691 PRINTS Mini-chromosome maintenance (MCM) protein family signature 413 427 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo19g00482 691 PRINTS Mini-chromosome maintenance (MCM) protein family signature 355 370 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo19g00482 691 PRINTS Mini-chromosome maintenance (MCM) protein family signature 441 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo19g00482 691 Pfam MCM P-loop domain 335 452 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo19g00482 691 Gene3D - 149 205 - -
Cmo19g00482 691 Gene3D - 124 245 IPR012340 -
Cmo19g00482 691 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 492 682 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo19g00482 691 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 43 452 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo19g00482 691 ProSiteProfiles MCM family domain profile. 336 452 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00482 Cmo-Chr19:5739138 Cmo06g01740 Cmo-Chr6:11928395 1.63E-52 dispersed
Cmo19g00482 Cmo-Chr19:5739138 Cmo14g01078 Cmo-Chr14:6029195 8.24E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00482 K10738 - csv:101205171 1054.66