Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo19g00482 | ATGGACATCTCCTTGGCGGCAATGGACGACTCTGCAACCAGTCCCGTCAAGGCCTTGGCTTCGTTTCTAATTCGCCGCCACTCCGATCAGCTTCTTTCCATTGCTCATTCCCCTGATCCTAAGCTCCATTACCCTCTATTCGTGGAATTCGCAGAGCTGATGGACGACGATCCACCTCTTGCTCGTCTTGTTTTCTCCCATCCGACCGAGTACTTGCGTATTTTTGACGATGCAGCTGTTTGGGCGCATAAGATCACTTTGGGTGATTCGAAAGGTTGTATAAATGGAATTAAGAAAGATTTCATCCATGTTCGCATTAATGTCGCCGGATCCCCTCTGGAATGGCCTGAGACTTCTCCAAGTATTGGGTCTATCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACGGTAATCAGATCTGGGGCAATTAAGATGTATGAGGGGGAGAGGTGGTACATTTGCCGGAGATGCAAGCACAAGTTCCCAGTATATCCCGAGCTGGAAGCCAGAAACTCAATACAGTTACCATCATTTTGTCCCTCTCAGAGGGCAAAACCATGTGAAGGGAAAAGTTTTGAGTGCTTGGAAGGTTCTGTAGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGGGTGTGGGATCCATTCCTCGTGCCATTCTAGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGATGAAGAATCTGCCTTTAAGTTATTGATTCCTCACTATTTCCTTCTCAATGGGGATGGGGGTTTGATTATTGGGGCAGACGATGTTATTGTTACAGGAGTATTGAGTGCAAAGTGGTCCCCAGACATCAAAGATGTACGGTGTGACCTTGATCCAATGCTAATTGCTAATCATGTGAGAAGAACCAATGAACTGAAGGCAGAGGTTGACATCCCTGATGACATAATTATGAATTTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATGTATCTGGAACCAAAGTTCGAGGAGAATCTCATCTATTGTTGGTTGGCGATCCTGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAACTGAGCAACCGGGCTGTTATTACCACTGGATTAGGAAGCACTAGCGCTGGACTAACTGTTGCTGCTGTCAAGGATGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTACTGGCTGATGGAGGACTTTGTTGTATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACGATCCATGAAGCAATGGAGCAACAGACTATAAGTGTCGCAAAGCGACAGTCGTTTCTGTGCTCTCTTCTTCAGCTTCCTTATCAACTGATGCATCAGGAGTTACAAAGTCAGGTGGGTTCTCAACTTTGGCCTCTTGTGAAGAAAGAGGAGGGTCGGCTGGCTGGTCTTGTAACAACTCTCAGTACTAGAACGATAGTATTTGGCGCAACAAATCCTAAAGGACATTATGACCCTGAACAACCCTCACAAGGAAAGCTCATCCTCCTGCTGCTTGAACATGTATTTGAATCCCTTACAAATACCAAAAATCCCGAATGGGATGCAGTTGTCTCATCACATATTCTCTCCGAGTGCCAACAAGAAAAGGGAAAGCGTGATAATGATCTTTCAAGTAACTGGCCTCTTACTATGCTTCGAAGATACCTCCAATTTGTAAAAGGATACTTCAGACCGGTCCTGACCAAGGAGGCAGAACAAATTATTTCAAGATACTATCAGCTTCAAAGAAGATCAGCAATGGATAATGCAGCCAGAACAACAGTCCGCATGCTCGAAAGTTTGATACGTTTAGCACAAGCACATGCACGGCTCATGTTTAGAAATGAGGTTACTCGGCTCGATGCCATTACGGCTATATTGTGCATCGAATCATCCATGACGACCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCACTCCAACTTTACCGAGAACCCAGATGAGGAATTCTCTGTTATTCGGTTCCTGAGGTTACCGTGA | 2076 | 45.33 | MDISLAAMDDSATSPVKALASFLIRRHSDQLLSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSHPTEYLRIFDDAAVWAHKITLGDSKGCINGIKKDFIHVRINVAGSPLEWPETSPSIGSIRVKHRGVLLTLKGTVIRSGAIKMYEGERWYICRRCKHKFPVYPELEARNSIQLPSFCPSQRAKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRAILVILKDDLVDLVKAGDEESAFKLLIPHYFLLNGDGGLIIGADDVIVTGVLSAKWSPDIKDVRCDLDPMLIANHVRRTNELKAEVDIPDDIIMNFRQFWSDFKDTPLKVALTLIGGVQHVDVSGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKRQSFLCSLLQLPYQLMHQELQSQVGSQLWPLVKKEEGRLAGLVTTLSTRTIVFGATNPKGHYDPEQPSQGKLILLLLEHVFESLTNTKNPEWDAVVSSHILSECQQEKGKRDNDLSSNWPLTMLRRYLQFVKGYFRPVLTKEAEQIISRYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSALVDSVGNALHSNFTENPDEEFSVIRFLRLP | 691 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 5739138 | 5769092 | + | CmoCh19G004820.1 | Cmo19g00482 | 403642 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo19g00482 | 691 | PANTHER | DNA HELICASE MCM9 | 43 | 452 | - | - | |
Cmo19g00482 | 691 | Pfam | MCM AAA-lid domain | 575 | 656 | IPR041562 | - | |
Cmo19g00482 | 691 | SMART | AAA_5 | 356 | 543 | IPR003593 | - | |
Cmo19g00482 | 691 | Gene3D | - | 296 | 662 | IPR027417 | - | |
Cmo19g00482 | 691 | SUPERFAMILY | Nucleic acid-binding proteins | 43 | 244 | IPR012340 | - | |
Cmo19g00482 | 691 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 356 | 660 | IPR027417 | - | |
Cmo19g00482 | 691 | SMART | mcm | 118 | 658 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo19g00482 | 691 | Pfam | MCM OB domain | 124 | 245 | IPR033762 | - | |
Cmo19g00482 | 691 | PANTHER | DNA HELICASE MCM9 | 492 | 682 | - | - | |
Cmo19g00482 | 691 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 413 | 427 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo19g00482 | 691 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 355 | 370 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo19g00482 | 691 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 441 | 454 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo19g00482 | 691 | Pfam | MCM P-loop domain | 335 | 452 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo19g00482 | 691 | Gene3D | - | 149 | 205 | - | - | |
Cmo19g00482 | 691 | Gene3D | - | 124 | 245 | IPR012340 | - | |
Cmo19g00482 | 691 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 492 | 682 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo19g00482 | 691 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 43 | 452 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Cmo19g00482 | 691 | ProSiteProfiles | MCM family domain profile. | 336 | 452 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo19g00482 | Cmo-Chr19:5739138 | Cmo06g01740 | Cmo-Chr6:11928395 | 1.63E-52 | dispersed | |
Cmo19g00482 | Cmo-Chr19:5739138 | Cmo14g01078 | Cmo-Chr14:6029195 | 8.24E-55 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo19g00482 | K10738 | - | csv:101205171 | 1054.66 |