Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00490 ATGGATGGGATCAACCGAAGTGGTGGGCCACTTGTAATTGCTTCTACCAACAGGCCTGATAGCATTGAGCCTGCATTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGTGTGCCATCTCCCAATCAACGGTTAGATATTCTACACACAATACTAAGTGAAATGGAGCACTCTCTTTCAGTAGTGCAAGTTCAACATCTAGCTATGGTTACACATGGATTTGTGGGTGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAATCTGTATAAGGCGATATCATGAGTTTAAAGTTTCTACTGATTGCGTTAGTTCTGGTAGATCTGTTATAGCAGAGGAACAACATATGGTTACTAAGGTGGATAACGAAGCCAATGTCGATCATATAATTTCGGAACCTGTTCTCTCAAAAGATGCTAGAAGTATATCAGGCATATGCTCAAACTCAGCGCCTTTATCGTTTTCTGAAGATACTCTTACATCTGAGTCTTTAGCATGTGTGTCCTCGAATGAAGTGGTTGCTGATAGTGAGGATATTTTTAACTCTTCTGAAATCAAGTGTAGATTGAAGGTTGCTTTTGAAGACTTTGAGATGGCTAGAATGAAAGTGCGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAAGGGGAGGTTAAGGTTCAATTGATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGTTAATGTTTGGACCTCCTGGATGTAGCAAAACCCTAATGGCACGTGCCGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTAAAGGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCTGTTAGATCTCTATTTGCTAAGGCAAGAGCTAATGCCCCATCAATCATATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTTTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAATTGGATGGTTTACATCAGAGAGTTGGTGTCACTGTCATTGCCGCTACGAATCGGCCAGATAAGATTGATCCGGCCCTTCTAAGGCCAGGTATTACCCGTACGAAACTTCTGTACGCTTATACGCCACCCATCTACAAATACAACAATCGCAGACGTTTTGATCGGTTGCTATATGTTGGGCCTCCAAATGAATCCGAACGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGCACAAGGAAGTTGGCTTCTCTTACCCCTGGGTGTACAGGGGCTGACATATCATTAATTTGCAGAGAAGCAGCCTTATTTGCCCTTGAGGAAAACCTTGAGGCTTCAAAAATAAGTATGCAACATTTAGAAACTGCAGCTGGACATGTGAAGCCATCTGAAACTGAACCTTATCGAGAATTATCATCTAGGTTTGAAAGGCTTGTTTGTTCTAGCTCACAAGAAGACAATGTTGCCCCTCGTGAAATCTGCTGCGTTACTTTTTTCTCGGTTTCCAGCTTGGGTTCATCATACGCTTGA 1611 43.39 MDGINRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSVVQVQHLAMVTHGFVGADLAALCNEAALICIRRYHEFKVSTDCVSSGRSVIAEEQHMVTKVDNEANVDHIISEPVLSKDARSISGICSNSAPLSFSEDTLTSESLACVSSNEVVADSEDIFNSSEIKCRLKVAFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQGEVKVQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDPALLRPGITRTKLLYAYTPPIYKYNNRRRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLTPGCTGADISLICREAALFALEENLEASKISMQHLETAAGHVKPSETEPYRELSSRFERLVCSSSQEDNVAPREICCVTFFSVSSLGSSYA 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5844420 5848680 + CmoCh19G004900.1 Cmo19g00490 403650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00490 536 ProSitePatterns AAA-protein family signature. 363 381 IPR003960 GO:0005524|GO:0016887
Cmo19g00490 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 98 IPR027417 -
Cmo19g00490 536 MobiDBLite consensus disorder prediction 1 25 - -
Cmo19g00490 536 Gene3D - 41 153 - -
Cmo19g00490 536 PANTHER ATPASE FAMILY PROTEIN 2 HOMOLOG 1 502 - -
Cmo19g00490 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 492 IPR027417 -
Cmo19g00490 536 Pfam ATPase family associated with various cellular activities (AAA) 261 383 IPR003959 GO:0005524|GO:0016887
Cmo19g00490 536 Pfam ATPase family associated with various cellular activities (AAA) 2 39 IPR003959 GO:0005524|GO:0016887
Cmo19g00490 536 SMART AAA_5 257 396 IPR003593 -
Cmo19g00490 536 PANTHER AAA-FAMILY ATPASE 1 502 - -
Cmo19g00490 536 Pfam AAA+ lid domain 64 102 IPR041569 -
Cmo19g00490 536 Pfam AAA+ lid domain 436 481 IPR041569 -
Cmo19g00490 536 Gene3D - 1 40 IPR027417 -
Cmo19g00490 536 CDD AAA 251 383 - -
Cmo19g00490 536 Gene3D - 415 497 - -
Cmo19g00490 536 Gene3D - 218 385 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00490 Cmo-Chr19:5844420 Cmo11g00085 Cmo-Chr11:398885 1.88E-12 dispersed
Cmo19g00490 Cmo-Chr19:5844420 Cmo14g00209 Cmo-Chr14:945027 1.69E-13 transposed
Cmo19g00490 Cmo-Chr19:5844420 Cmo06g00381 Cmo-Chr6:1853732 1.76E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00490 - - cpep:111811570 939.873