Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00501 ATGCCGGATTCCAATTTCCAAGATGCGATGTACGGTTCCGCCGTCGTGAACAACGGTGGCCGGGTTTTGGATAGCATTCAGAACCGAGTTGGCGATGAAGGTGACGACATTACTGTCGGGGAAGAGTCCATGGACAATCCTCAGATGCGCTTCGAAGATTCTGGGGGAATGAACCGAGTCCAGGACATTGTTCCTTCGTCGTATGTTTCCGGCTCCGATTACAACCCTTTGACTGGAAACGGTGGTGCTGACCAACTTACGCTATCGTTCCGCGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGGATTCCTGCTGTTGGAAGCGTTCCCGTCAACCAACAGGGTACCAATGGCTTTCCTGTCAGATCGGTTCAACCACAAAGAGCTGCTTCATTGAATAGGTTTAGGGAGAAGAGAAAAGAAAGGTGTTTTGAGAAGAAAATTCGTTACACCGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCTAATGCAGATGAAGTGGGCTCATCTTCACTTTTGTCTCAAACGTTGGATCCTGGACACGATGATGGCTTGTTGGAAGCCTCATGTACACATTGTGGAACCAGTTCAAAATCTACTCCGATGATGCGTCGTGGGCCTGCTGGCCCTAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCGAACGCCGGAGTTCAAGAACTCTCCGTGAAGGATACCGAACAGAGCGATGGTGAAGCTAATGAATCCGACGCTGCAGTTATTCGTGCTGTGGCCGAAGTTGGATCATTCGAGTATTCCAACAAATTATATGGAAATTCATGCTATGCTCTGTGCAGTTTAGAGAGTATAAGAAGAACCATAAGCAATGGTAGAATGAGTTCCCCATTTGTCACCAATCATGTAGCTGAAAATAGATGGGATTCAGAAGGTGGGTTTCAATGGCGGCCTTTTGGTCGAAGTCTCAGCTCTGTCCTTCTCTGCTCTCTCTTCCCCGTTGTTGCCGCCTTTCTCCTCTTCGCCGCTCTTTGCTGCCTCATCGCGTTCCCTATTTTCGCCGCCGCCGCCGCCGCCGCCGGATCTATCTCAGTCGCGAGTGGTTCGGTTCGGATGCAACTCCCAAGTATTCGTCTTCTTTTCCCTCTCTTTTGCGTCTGGTGCTACACATCAAGCAATCAAAACAGAATGGGAGTTGGAAATGTGTGGGTAAATTTTTGGGTTGTACTTAATCAGATCATCGAACGTGTTACTAGTTTTTTTAGGAGATGCGCCTTCAATGTTCTATCGATGGGTTCAATTCCCATTCATGTTGCTTTCATCATGGATGGGAATAGGAGATTTGCAAAGAAAAAAAAGTTGGCAGAAGGGGCTGGCCATAGGTTTGGGTATTTGTCTTTGGTGTCCATGCTCAAGTACTGCTTTGAATTTGGTGTGAAGTACGTGACGATCTACGCCTTCAGCATCGATAATTTTCGAAGAAGTCCAGAAGAAGTTCAAGGTGTGATGGATCTGATGTTGGAAAAAGTTGAATTGTTGATTAGAGAAGAAAGCCTTGTGAATCAATATGGAGTTAGACTTCACTTCTTAGGAAACTTAGGTTTGTTGAGTGAACCCGTCAGGAAAGCGCTTGAAAAAGCGGCGACAGCCACATGCAACAATAACAGAGCAGTACTTGCTATCTGTGTTGCTTACACTTCCACCGATGAAATTGTTCGTGCCGTTGAAAAGTCTTGTGAAGAGAAATGGGATGAGATGAATTTGAAAAGTGCAAATGGAGAAGGAAATGATTTAGGCAAAAAGTTAGTAATGGCTGAAAATGGTGAGAACTTCATAACATTAGCTGATGTTGAGAAGCATATGTATACCACGGTTACTCCCGACCCCGATATGCTAATTCGTACGTCTGGAGAGGCCCGCTTGAGCAATTTCCTTTTGTGGCAGACCTCTTCATGTTATTTGTATTCTCCCTCAGCACTTTGGCCAGAAATTAATTTTTGGCATTTGCTGTGGGCAATCTTGAATTTTCAAAGAAACAATCTTCGTTTGGTAAAGAAAAGGAAACAGTTATAA 2172 45.53 MPDSNFQDAMYGSAVVNNGGRVLDSIQNRVGDEGDDITVGEESMDNPQMRFEDSGGMNRVQDIVPSSYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPVNQQGTNGFPVRSVQPQRAASLNRFREKRKERCFEKKIRYTVRKEVALRMQRKKGQFISSKANADEVGSSSLLSQTLDPGHDDGLLEASCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNAGVQELSVKDTEQSDGEANESDAAVIRAVAEVGSFEYSNKLYGNSCYALCSLESIRRTISNGRMSSPFVTNHVAENRWDSEGGFQWRPFGRSLSSVLLCSLFPVVAAFLLFAALCCLIAFPIFAAAAAAAGSISVASGSVRMQLPSIRLLFPLFCVWCYTSSNQNRMGVGNVWVNFWVVLNQIIERVTSFFRRCAFNVLSMGSIPIHVAFIMDGNRRFAKKKKLAEGAGHRFGYLSLVSMLKYCFEFGVKYVTIYAFSIDNFRRSPEEVQGVMDLMLEKVELLIREESLVNQYGVRLHFLGNLGLLSEPVRKALEKAATATCNNNRAVLAICVAYTSTDEIVRAVEKSCEEKWDEMNLKSANGEGNDLGKKLVMAENGENFITLADVEKHMYTTVTPDPDMLIRTSGEARLSNFLLWQTSSCYLYSPSALWPEINFWHLLWAILNFQRNNLRLVKKRKQL 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5952207 5962254 + CmoCh19G005010.1 Cmo19g00501 403661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00501 723 PANTHER ALKYL TRANSFERASE 444 722 - -
Cmo19g00501 723 SMART GATA_3 212 265 IPR000679 GO:0006355|GO:0043565
Cmo19g00501 723 ProSiteProfiles CCT domain profile. 146 188 IPR010402 GO:0005515
Cmo19g00501 723 Pfam tify domain 84 113 IPR010399 -
Cmo19g00501 723 Gene3D - 434 711 IPR036424 GO:0016765
Cmo19g00501 723 ProSitePatterns Undecaprenyl pyrophosphate synthase family signature. 663 680 IPR018520 GO:0016765
Cmo19g00501 723 PANTHER DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER 444 722 IPR001441 GO:0016765
Cmo19g00501 723 CDD ZnF_GATA 217 272 IPR000679 GO:0006355|GO:0043565
Cmo19g00501 723 CDD Cis_IPPS 470 711 IPR001441 GO:0016765
Cmo19g00501 723 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 216 263 - -
Cmo19g00501 723 Pfam Putative undecaprenyl diphosphate synthase 474 713 IPR001441 GO:0016765
Cmo19g00501 723 Gene3D - 215 263 IPR013088 GO:0006355|GO:0008270
Cmo19g00501 723 Pfam CCT motif 146 188 IPR010402 GO:0005515
Cmo19g00501 723 SMART tify_2 79 114 IPR010399 -
Cmo19g00501 723 Hamap Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 467 718 IPR001441 GO:0016765
Cmo19g00501 723 ProSitePatterns GATA-type zinc finger domain. 218 245 IPR000679 GO:0006355|GO:0043565
Cmo19g00501 723 ProSiteProfiles Tify domain profile. 79 114 IPR010399 -
Cmo19g00501 723 Pfam GATA zinc finger 218 253 IPR000679 GO:0006355|GO:0043565
Cmo19g00501 723 SUPERFAMILY Undecaprenyl diphosphate synthase 462 711 IPR036424 GO:0016765
Cmo19g00501 723 TIGRFAM uppS: di-trans,poly-cis-decaprenylcistransferase 467 713 IPR001441 GO:0016765
Cmo19g00501 723 ProSiteProfiles GATA-type zinc finger domain profile. 217 269 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00161 Cmo-Chr12:1036433 Cmo19g00501 Cmo-Chr19:5952207 1.78E-50 dispersed
Cmo17g00616 Cmo-Chr17:6496734 Cmo19g00501 Cmo-Chr19:5952207 1.54E-55 dispersed
Cmo19g00501 Cmo-Chr19:5952207 Cmo11g00182 Cmo-Chr11:877863 4.52E-10 dispersed
Cmo11g01455 Cmo-Chr11:10243116 Cmo19g00501 Cmo-Chr19:5952207 9.10E-179 transposed
Cmo20g00376 Cmo-Chr20:1849939 Cmo19g00501 Cmo-Chr19:5952207 8.76E-36 transposed
Cmo11g01454 Cmo-Chr11:10236528 Cmo19g00501 Cmo-Chr19:5952207 1.69E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11621 PF01255 Prenyltransf 8.40E-74 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00501 K11778 - csv:101222542 487.648