Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00501 ATGCCGGATTCCAATTTCCAAGATGCGATGTACGGTTCCGCCGTCGTGAACAACGGTGGCCGGGTTTTGGATAGCATTCAGAACCGAGTTGGCGATGAAGGTGACGACATTACTGTCGGGGAAGAGTCCATGGACAATCCTCAGATGCGCTTCGAAGATTCTGGGGGAATGAACCGAGTCCAGGACATTGTTCCTTCGTCGTATGTTTCCGGCTCCGATTACAACCCTTTGACTGGAAACGGTGGTGCTGACCAACTTACGCTATCGTTCCGCGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGGATTCCTGCTGTTGGAAGCGTTCCCGTCAACCAACAGGGTACCAATGGCTTTCCTGTCAGATCGGTTCAACCACAAAGAGCTGCTTCATTGAATAGGTTTAGGGAGAAGAGAAAAGAAAGGTGTTTTGAGAAGAAAATTCGTTACACCGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCTAATGCAGATGAAGTGGGCTCATCTTCACTTTTGTCTCAAACGTTGGATCCTGGACACGATGATGGCTTGTTGGAAGCCTCATGTACACATTGTGGAACCAGTTCAAAATCTACTCCGATGATGCGTCGTGGGCCTGCTGGCCCTAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCGAACGCCGGAGTTCAAGAACTCTCCGTGAAGGATACCGAACAGAGCGATGGTGAAGCTAATGAATCCGACGCTGCAGTTATTCGTGCTGTGGCCGAAGTTGGATCATTCGAGTATTCCAACAAATTATATGGAAATTCATGCTATGCTCTGTGCAGTTTAGAGAGTATAAGAAGAACCATAAGCAATGGTAGAATGAGTTCCCCATTTGTCACCAATCATGTAGCTGAAAATAGATGGGATTCAGAAGGTGGGTTTCAATGGCGGCCTTTTGGTCGAAGTCTCAGCTCTGTCCTTCTCTGCTCTCTCTTCCCCGTTGTTGCCGCCTTTCTCCTCTTCGCCGCTCTTTGCTGCCTCATCGCGTTCCCTATTTTCGCCGCCGCCGCCGCCGCCGCCGGATCTATCTCAGTCGCGAGTGGTTCGGTTCGGATGCAACTCCCAAGTATTCGTCTTCTTTTCCCTCTCTTTTGCGTCTGGTGCTACACATCAAGCAATCAAAACAGAATGGGAGTTGGAAATGTGTGGGTAAATTTTTGGGTTGTACTTAATCAGATCATCGAACGTGTTACTAGTTTTTTTAGGAGATGCGCCTTCAATGTTCTATCGATGGGTTCAATTCCCATTCATGTTGCTTTCATCATGGATGGGAATAGGAGATTTGCAAAGAAAAAAAAGTTGGCAGAAGGGGCTGGCCATAGGTTTGGGTATTTGTCTTTGGTGTCCATGCTCAAGTACTGCTTTGAATTTGGTGTGAAGTACGTGACGATCTACGCCTTCAGCATCGATAATTTTCGAAGAAGTCCAGAAGAAGTTCAAGGTGTGATGGATCTGATGTTGGAAAAAGTTGAATTGTTGATTAGAGAAGAAAGCCTTGTGAATCAATATGGAGTTAGACTTCACTTCTTAGGAAACTTAGGTTTGTTGAGTGAACCCGTCAGGAAAGCGCTTGAAAAAGCGGCGACAGCCACATGCAACAATAACAGAGCAGTACTTGCTATCTGTGTTGCTTACACTTCCACCGATGAAATTGTTCGTGCCGTTGAAAAGTCTTGTGAAGAGAAATGGGATGAGATGAATTTGAAAAGTGCAAATGGAGAAGGAAATGATTTAGGCAAAAAGTTAGTAATGGCTGAAAATGGTGAGAACTTCATAACATTAGCTGATGTTGAGAAGCATATGTATACCACGGTTACTCCCGACCCCGATATGCTAATTCGTACGTCTGGAGAGGCCCGCTTGAGCAATTTCCTTTTGTGGCAGACCTCTTCATGTTATTTGTATTCTCCCTCAGCACTTTGGCCAGAAATTAATTTTTGGCATTTGCTGTGGGCAATCTTGAATTTTCAAAGAAACAATCTTCGTTTGGTAAAGAAAAGGAAACAGTTATAA 2172 45.53 MPDSNFQDAMYGSAVVNNGGRVLDSIQNRVGDEGDDITVGEESMDNPQMRFEDSGGMNRVQDIVPSSYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPVNQQGTNGFPVRSVQPQRAASLNRFREKRKERCFEKKIRYTVRKEVALRMQRKKGQFISSKANADEVGSSSLLSQTLDPGHDDGLLEASCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNAGVQELSVKDTEQSDGEANESDAAVIRAVAEVGSFEYSNKLYGNSCYALCSLESIRRTISNGRMSSPFVTNHVAENRWDSEGGFQWRPFGRSLSSVLLCSLFPVVAAFLLFAALCCLIAFPIFAAAAAAAGSISVASGSVRMQLPSIRLLFPLFCVWCYTSSNQNRMGVGNVWVNFWVVLNQIIERVTSFFRRCAFNVLSMGSIPIHVAFIMDGNRRFAKKKKLAEGAGHRFGYLSLVSMLKYCFEFGVKYVTIYAFSIDNFRRSPEEVQGVMDLMLEKVELLIREESLVNQYGVRLHFLGNLGLLSEPVRKALEKAATATCNNNRAVLAICVAYTSTDEIVRAVEKSCEEKWDEMNLKSANGEGNDLGKKLVMAENGENFITLADVEKHMYTTVTPDPDMLIRTSGEARLSNFLLWQTSSCYLYSPSALWPEINFWHLLWAILNFQRNNLRLVKKRKQL 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5952207 5962254 + CmoCh19G005010.1 Cmo19g00501 403661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00501 723 PANTHER ALKYL TRANSFERASE 444 722 - -
Cmo19g00501 723 SMART GATA_3 212 265 IPR000679 GO:0006355|GO:0043565
Cmo19g00501 723 ProSiteProfiles CCT domain profile. 146 188 IPR010402 GO:0005515
Cmo19g00501 723 Pfam tify domain 84 113 IPR010399 -
Cmo19g00501 723 Gene3D - 434 711 IPR036424 GO:0016765
Cmo19g00501 723 ProSitePatterns Undecaprenyl pyrophosphate synthase family signature. 663 680 IPR018520 GO:0016765
Cmo19g00501 723 PANTHER DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER 444 722 IPR001441 GO:0016765
Cmo19g00501 723 CDD ZnF_GATA 217 272 IPR000679 GO:0006355|GO:0043565
Cmo19g00501 723 CDD Cis_IPPS 470 711 IPR001441 GO:0016765
Cmo19g00501 723 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 216 263 - -
Cmo19g00501 723 Pfam Putative undecaprenyl diphosphate synthase 474 713 IPR001441 GO:0016765
Cmo19g00501 723 Gene3D - 215 263 IPR013088 GO:0006355|GO:0008270
Cmo19g00501 723 Pfam CCT motif 146 188 IPR010402 GO:0005515
Cmo19g00501 723 SMART tify_2 79 114 IPR010399 -
Cmo19g00501 723 Hamap Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 467 718 IPR001441 GO:0016765
Cmo19g00501 723 ProSitePatterns GATA-type zinc finger domain. 218 245 IPR000679 GO:0006355|GO:0043565
Cmo19g00501 723 ProSiteProfiles Tify domain profile. 79 114 IPR010399 -
Cmo19g00501 723 Pfam GATA zinc finger 218 253 IPR000679 GO:0006355|GO:0043565
Cmo19g00501 723 SUPERFAMILY Undecaprenyl diphosphate synthase 462 711 IPR036424 GO:0016765
Cmo19g00501 723 TIGRFAM uppS: di-trans,poly-cis-decaprenylcistransferase 467 713 IPR001441 GO:0016765
Cmo19g00501 723 ProSiteProfiles GATA-type zinc finger domain profile. 217 269 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00501 K11778 DHDDS, RER2, SRT1; ditrans,polycis-polyprenyl diphosphate synthase [EC:2.5.1.87] - csv:101222542 487.648
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00161 Cmo-Chr12:1036433 Cmo19g00501 Cmo-Chr19:5952207 1.78E-50 dispersed
Cmo17g00616 Cmo-Chr17:6496734 Cmo19g00501 Cmo-Chr19:5952207 1.54E-55 dispersed
Cmo19g00501 Cmo-Chr19:5952207 Cmo11g00182 Cmo-Chr11:877863 4.52E-10 dispersed
Cmo11g01455 Cmo-Chr11:10243116 Cmo19g00501 Cmo-Chr19:5952207 9.10E-179 transposed
Cmo20g00376 Cmo-Chr20:1849939 Cmo19g00501 Cmo-Chr19:5952207 8.76E-36 transposed
Cmo11g01454 Cmo-Chr11:10236528 Cmo19g00501 Cmo-Chr19:5952207 1.69E-111 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g00616 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cmo08g00819 CST 1 229 Tify Gene Family AT3G21175 55.5 4.4e-56 215.3
Cmo05g00563 CST 48 255 Tify Gene Family AT4G24470 56.9 7.8e-62 235.0
Cmo12g00161 CST 48 271 Tify Gene Family AT4G24470 53.1 1.4e-58 224.2
Cmo11g01455 . 89 302 Tify Gene Family AT4G24470 52.1 4.4e-49 192.6
Cmo19g00501 . 82 260 Tify Gene Family AT4G24470 59.2 2.4e-47 186.8
Cmo08g00819 CST 1 299 Tify Gene Family AT1G51600 56.6 5.0e-82 302.0
Cmo17g00616 CST 1 265 Tify Gene Family AT1G51600 59.3 1.0e-79 294.3
Cmo19g00501 . 79 280 Tify Gene Family AT1G51600 57.3 1.3e-53 207.6
Cmo11g01455 . 86 287 Tify Gene Family AT1G51600 57.1 6.3e-53 205.3
Cmo05g00561 . 71 246 Tify Gene Family AT1G51600 59.6 1.0e-50 198.0
Cmo05g00563 CST 72 250 Tify Gene Family AT1G51600 56.5 5.2e-47 185.7
Cmo12g00161 CST 371 544 Tify Gene Family AT1G51600 56.4 2.0e-46 183.7
Cmo05g00563 CST 48 255 Tify Gene Family AT4G24470 56.9 7.8e-62 235.0
Cmo12g00161 CST 48 271 Tify Gene Family AT4G24470 53.1 1.4e-58 224.2
Cmo11g01455 . 89 302 Tify Gene Family AT4G24470 52.1 4.4e-49 192.6
Cmo19g00501 . 82 260 Tify Gene Family AT4G24470 59.2 2.4e-47 186.8
Cmo08g00819 CST 1 299 Tify Gene Family AT1G51600 56.6 5.0e-82 302.0
Cmo17g00616 CST 1 265 Tify Gene Family AT1G51600 59.3 1.0e-79 294.3
Cmo19g00501 . 79 280 Tify Gene Family AT1G51600 57.3 1.3e-53 207.6
Cmo11g01455 . 86 287 Tify Gene Family AT1G51600 57.1 6.3e-53 205.3
Cmo05g00561 . 71 246 Tify Gene Family AT1G51600 59.6 1.0e-50 198.0
Cmo05g00563 CST 72 250 Tify Gene Family AT1G51600 56.5 5.2e-47 185.7
Cmo12g00161 CST 371 544 Tify Gene Family AT1G51600 56.4 2.0e-46 183.7
Cmo17g00616 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cmo08g00819 CST 1 229 Tify Gene Family AT3G21175 55.5 4.4e-56 215.3
Cmo17g00201 CST 1 180 Tify Gene Family AT4G14713 52.1 4.7e-45 178.7
Cmo08g01098 CST 1 180 Tify Gene Family AT4G14713 52.1 1.4e-44 177.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004436 0 4 0 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 2 1 1 1 2 1 3 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11621 PF01255 Prenyltransf 8.40E-74 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00501 Cmo_Chr19 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0