Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00502 ATGGCGAACGAGCAAATGCCTCCCTCTCCATCGTCTTCCTCCTCCTCTGCTGCCTCTCCCTTGGGAAACTCCGTCATCCCAATAGTGAACAAGCTTCAGGACATTTTCGCTCAGTTGGGAAGCCAATCCACCATTGAGCTTCCTCAGGTTGCTGTTGTCGGTAGTCAGAGCAGTGGCAAGTCTAGCGTACTGGAAGCTCTCGTCGGTCGCGACTTCCTTCCGAGGGGTTCTGATATCTGCACGCGGCGGCCATTGGTGCTTCAGCTCTTGCAGACTAAGACTAGCGAGGAGTATGGGGAGTTCTTGCACCTACCCGGGAGGAAATTCTACGACTTCTCTGAAATTCGGAGGGAAATTCGTGCTGAGACTGATCGGGAGGCTGGAGGAAATAAAGGTGTCTCAGACAAGCAAATTCGTTTGAAGATCTTTTCACCTAATGTTCTTGATATTACTCTGGTTGATCTTCCTGGTATAACCAAAGTTCCAGTTGGAGATCAACCTTCTGATATTGAAGCTCGGATTCGTACAATGATTATGTCGTACATTAAAGTTCCAAGCTGTTTGATTCTTGCTGTTACACCTGCAAATTCAGATTTAGCTAACTCAGATGCTCTTCAGATCGCTGGAAATGCCGATCCTGATGGTGTTAGAACGATTGGGATAATCACAAAGCTTGACATAATGGATAGAGGCACTGATGCACGTAACCTTTTGCATGGAAAAGTGATTCCGTTGCGACTTGGCTACTTTGGTGTTGTGAATCGAAGTCAGGAGGATATTATACTCAACCGGAGTATTAAAGACGCACTTATAGCTGAGGAGAAATTTTTTCGCAGTCATCCAGTATATGATGGTCTGGCTGATCGCTGTGGTGTTCCTCAATTAGCAAAGAAGTTAAACCAGATTTTAGTGCAACATATCCAGGCAATTCTACCTGGTTTGAAGTCACGCATAAGCTCTGCACTAGTTTCAGCTGCCAAGGAGCATGGCAGTTATGGAGAAATCACGGAGTCAAAGGCTGGTCAAGGTGCTCTTCTTCTGAACATTTTATCAAAATATTGTGAAGCATTTTCATCAATGGTTGATGGGAAGAATGAAGAAATGTCAACATCTGAGCTCTCGGGTGGAACTCGTATTCACTATATTTTTCAATCAATCTTTGTGAAGAGTTTAGAGGAAGTGGATCCTTGTGAGGACTTGACTGATGATGACATCCGAACTGCTATCCAGAATGCAACTGGTCCTAAATGTGCTTTATTTGTGCCTGAAGTTCCTTTTGAAGTTCTTATTCGCAAGCAAATAGCTCGGTTATTAGATCCAAGCCTTCAGTGTGCAAGGTTCATATATGATGAACTAATTAAGATTAGCCATCGTTGTGTAGTAAGTGAACTACAAAGATTTCCTGTTTTAAGAAGGCGCATGGATGAAGTTATGAGCAATTTTTTGCGAGAAGGTCTTGAGCCTTCAGAGACTATGATTGGGCATATTATCGATATGGAGATGAACTACATAAACACTTCACACCCAAATTTTATTGGTGGGAGCAAGGCAGTTGAGATTGCAATGCAACAAGTCAAATCCTCTAGGGTTTCCTTGCCTATCTCCAGACAGAAGGATAATATAGAGCTTGATAAGGCAACAACCACATCAGAGAGAAGTTTGAAAACTCGTGGGATTCTGGCAAGGCAAGTAAACGGGATAGTAGCTGATCAGGCTGTTCGTCCATTGGCAGAAGGTGAAAAAGTTACTTTGTCTGGAGGCGCAGGGAGTTCCAGTTGGGGGATTTCATCTATTTTTGGCAGTAATAGCAGTGATAACCATAGTCCTGTTAAAGAAAATTCATCAAAAAAATCATTTGGCGAGCCTTTGCATAGTGTGGAACAATCTTTCTCAATGATCCACTTGAGAGAGCCACCAGCTGTCTTGAGGCCCTCAGAAAGCCTTACGGAGCAGGAGGCTATTGAAATTGCTATAACTAAACTGCTATTGAGATCCTACTATGATATTGTTAGGAAGAATATAGAGGACTATGTACCCAAGGCCATCATGAACTTCCTGGTAAACCATACCAAACGAGATCTGCACAATGTATTCATCAAAAAACTCTACCGAGAGAACCTGTTTGAAGAGATGTTGCAGGAGCCTGATGAAGTGGCAATGAAGAGAAAGCGTACAAGGGAAACCCTTCGTGTACTTCAGCAGGCTTTTCGGACACTGGATGAGTTACCTTTGGAGGCTGAAACAGTTGAAAAGGGATACAATGTGGGCGCCGATCCAACGGGATTACCGAGGATCCATGGACTGCCAATGTCGTCGATGTATTCTACATCCAGTTCCGGCGATTCATATTCTGCTTCCCCAAGGCATCTAAAATCTCGCAAGTCACCTCATTCGGAGGAGCTCTCGTCTCCATTCCATCCTAATGCTGATTCTAATGGAAGCGGATTCCTGTAA 2454 43.89 MANEQMPPSPSSSSSSAASPLGNSVIPIVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGSDICTRRPLVLQLLQTKTSEEYGEFLHLPGRKFYDFSEIRREIRAETDREAGGNKGVSDKQIRLKIFSPNVLDITLVDLPGITKVPVGDQPSDIEARIRTMIMSYIKVPSCLILAVTPANSDLANSDALQIAGNADPDGVRTIGIITKLDIMDRGTDARNLLHGKVIPLRLGYFGVVNRSQEDIILNRSIKDALIAEEKFFRSHPVYDGLADRCGVPQLAKKLNQILVQHIQAILPGLKSRISSALVSAAKEHGSYGEITESKAGQGALLLNILSKYCEAFSSMVDGKNEEMSTSELSGGTRIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKCALFVPEVPFEVLIRKQIARLLDPSLQCARFIYDELIKISHRCVVSELQRFPVLRRRMDEVMSNFLREGLEPSETMIGHIIDMEMNYINTSHPNFIGGSKAVEIAMQQVKSSRVSLPISRQKDNIELDKATTTSERSLKTRGILARQVNGIVADQAVRPLAEGEKVTLSGGAGSSSWGISSIFGSNSSDNHSPVKENSSKKSFGEPLHSVEQSFSMIHLREPPAVLRPSESLTEQEAIEIAITKLLLRSYYDIVRKNIEDYVPKAIMNFLVNHTKRDLHNVFIKKLYRENLFEEMLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYNVGADPTGLPRIHGLPMSSMYSTSSSGDSYSASPRHLKSRKSPHSEELSSPFHPNADSNGSGFL 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5964509 5981207 - CmoCh19G005020.1 Cmo19g00502 403662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00502 817 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 44 312 IPR030381 GO:0005525
Cmo19g00502 817 MobiDBLite consensus disorder prediction 755 817 - -
Cmo19g00502 817 CDD DLP_1 45 312 IPR001401 GO:0003924|GO:0005525
Cmo19g00502 817 Pfam Dynamin central region 233 519 IPR000375 -
Cmo19g00502 817 Pfam Dynamin family 50 224 IPR045063 -
Cmo19g00502 817 PRINTS Dynamin signature 47 65 IPR022812 -
Cmo19g00502 817 PRINTS Dynamin signature 72 89 IPR022812 -
Cmo19g00502 817 PRINTS Dynamin signature 144 161 IPR022812 -
Cmo19g00502 817 PRINTS Dynamin signature 194 212 IPR022812 -
Cmo19g00502 817 PRINTS Dynamin signature 213 229 IPR022812 -
Cmo19g00502 817 PRINTS Dynamin signature 236 255 IPR022812 -
Cmo19g00502 817 SMART GED_2 651 742 IPR003130 GO:0003924|GO:0005525
Cmo19g00502 817 Gene3D - 23 321 IPR027417 -
Cmo19g00502 817 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 73 82 IPR019762 -
Cmo19g00502 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 320 IPR027417 -
Cmo19g00502 817 MobiDBLite consensus disorder prediction 770 786 - -
Cmo19g00502 817 MobiDBLite consensus disorder prediction 602 621 - -
Cmo19g00502 817 SMART dynamin_3 22 264 IPR001401 GO:0003924|GO:0005525
Cmo19g00502 817 MobiDBLite consensus disorder prediction 801 817 - -
Cmo19g00502 817 PANTHER DYNAMIN 16 773 IPR022812 -
Cmo19g00502 817 ProSiteProfiles GED domain profile. 656 747 IPR020850 -
Cmo19g00502 817 Pfam Dynamin GTPase effector domain 652 741 IPR003130 GO:0003924|GO:0005525
Cmo19g00502 817 Gene3D Dynamin, middle domain 342 722 - -
Cmo19g00502 817 PANTHER DYNAMIN 3A-LIKE PROTEIN 16 773 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00502 K17065 DNM1L; dynamin 1-like protein [EC:3.6.5.5] - csv:101208055 1409.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00446 Cmo-Chr19:5451746 Cmo19g00502 Cmo-Chr19:5964509 1.05E-90 dispersed
Cmo01g01264 Cmo-Chr1:10120784 Cmo19g00502 Cmo-Chr19:5964509 9.62E-13 transposed
Cmo04g00727 Cmo-Chr4:3615106 Cmo19g00502 Cmo-Chr19:5964509 2.02E-83 transposed
Cmo04g02203 Cmo-Chr4:16415003 Cmo19g00502 Cmo-Chr19:5964509 1.85E-97 transposed
Cmo05g00847 Cmo-Chr5:5325774 Cmo19g00502 Cmo-Chr19:5964509 7.77E-45 transposed
Cmo06g01210 Cmo-Chr6:9206862 Cmo19g00502 Cmo-Chr19:5964509 2.46E-91 transposed
Cmo16g00592 Cmo-Chr16:2858975 Cmo19g00502 Cmo-Chr19:5964509 2.12E-94 transposed
Cmo11g01509 Cmo-Chr11:10700269 Cmo19g00502 Cmo-Chr19:5964509 1.76E-09 transposed
Cmo11g01453 Cmo-Chr11:10217832 Cmo19g00502 Cmo-Chr19:5964509 0 wgd
Cmo19g00502 Cmo-Chr19:5964509 Cmo04g00435 Cmo-Chr4:2159802 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0438 . . . . Chy04g00050 . . . . . . . Bma05g00717 . . . Cmo19g00502 . . . . . . Bhi05g00520 . . . . . . Cla09g01176 Cam09g1241 Cec09g1257 Cco09g1287 . . Cre09g1205 . Csa03g04650 . Cme04g00064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001151 1 6 1 4 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 3 3 2 2 8 3 1 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00502 Cmo_Chr19 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0