Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00505 ATGGCTGCACAAAGCTCCAATTCCAAGTTTCTTCTCATATGTTCGTTCTTCCTTATCAACATTTCACTGTTCCTCTCTACACTTCCATTTGCAAGTTCTTTATCTTTCAACTTCACTTCTTTCAATCCAAGCAACACCGACATCATCTACGACAGAGCATTCCCGACAAACCAAGCAATCGAGCTCACTGGGGGTGACGCCAACATGGATTATGTTGGAAGAGCTATGTATTCCCAACCCTTGCATCTTTGGGATAAAGTCTCTGGAAACTTGTCGAGTTTCCAAACCAATTTCTCCTTTGTCATTGATTCAAGGCAAAAATCAACCTATGGTGATGGCCTTACCTTCTTCTTTGCCCCTGTTGGTTCTAAGTTCCAGGCTAACATCTCAAGAGGCAGCGGCTTGGGTATTGGCTACGATCCCGAGTTAACGAATGCGACAGCCACATTTTTTGCAGTTGAGTTTGATATCTACAGCAACCTTTTCGACCCACCTGAAAAGCTCGAACATGTAGGTATCGATATTAGTTCAATGAGATCTATTGCATATTCGATATGGAAATGTGATATCAAGGGAGGGAAGAAGAATCATGTTTGGATTAAATATGATTCTGTTAATCATAATTTGAGTATTACTTTTACTGGGTTTGATCTGAATGGTAGTATTCTGTTCCAACATCTTCACCATGTTGTAGATTTGAGGTTGCATCTACCTGAACGGGTTACTTTTGGCTTTTCTGCTTCCACTGGTTATGCATATGCAACTCACACTGTATATTCGTGGTCTTTTGAGTCAACGCTCGACTTGACCCTTAATCCAAACTTCACCTCTAGTTCTAATTTGTCCCCACGTCCTGAGCCAAGTCCTGAGCCAAGTCCCGAGCCAAGTCCCGCCGAGTCAATTCTCGAGTCAATTCCTGAGCCAAGGCCTAACTTGCACCCAAGTCATAGTAATGGTAGCAAGGCAGGTCTAGCAGTCGGATTGGGCGTTGTTGGAGCAGCTATCATAGTGGGAGGGTTAGTGTTGGTTTGGATAGCTGTTTGGAAGAAGAGAATGGCAATGAGGAAGAACATAGAGGAGGAGATAATGTTGGATGATTCTGAGTTTGAAAGGGGTAAAGGGCCTCGACGGTTTTCGTATAAGGAATTGGCTCGAGCAACGAACAATTTTAAGGAGGATAAGAAGCTTGGAAAAGGAGGATTTGGCGATGTTTATAAAGGTTTCTTAAGTGACTTGAATTGCGATGTTGCTGTGAAGAGAATATCAAAAGGGTCTAAGCAAGGGATAAAGGAGTATGCATCTGAGGTCAAGATCATCAGCCAATTGAGGCATAGAAACTTAGTTCAACTAATTGGTTGGTGTCATGAGAAAAGTAAACTTCTGTTGGTTTACGAATTCATGCCAAATGGAAGCTTAGACGCCCATCTTTTCAAAGAAAACAATTTCTTGACATGGGAATGTCGGTACAGAATCGCTCAAGGAATCGCCTCAGGTTTACTATATCTTCACGAAGAGTGGGAAAAATGTGTGGTGCATAGAGATATAAAGTCGAGCAATGTAATGTTGGATTCGAGTTTTAATGCGAAGCTCGGAGATTTCGGGTTAGCTAGGTTAGTGGACCATAACAAAGGTTCACAAACAACTCTTCTTGCTGGGACGATTGGCTATTTGGCTCCTGAATGTGCAACAACAGGAAGGGCTTCAAAGGAATCAGATGTCTACAGCTTCGGGATGGTTGCTTTGGAAATTGCTTGTGGAAGAAAACCTTTCGACCCGAATGCAGAGGACGAGAAGATTGTGATGGTGGAGTGGGTTTGGAAGCTTTATGGTTGTGGAAAGCTTCTTGAAGGAATAGACTCAAAACTGATCCAAGAAAGGTTTGAAGATGAGCAGCAGAAGGAGGAGCAGATGGAGCGTCTGATGGTGGTGGGTCTGTGGTGTGCTCATCCAGATAGCAATTGCAGACCTTCAATAAGACAAGCCATAAACGTGATGAACTTCGAAGCGCCATTGCCTCTTCTTCCATCTCAATTGCCTGTACCCACTTATGAATTTCTTCCCATTAGAAGGCCAAATGCTTCGTCTTCACCATCATCATCAGCTACTCAAAATAGTGTTGCTTCTCATACTATTAATAGCTCCAACTTTAGTAATGTCGTTAGCAGTTCTTCCCACTCGGCTGCATCTTCTATACATCTTCTTCAACATGTTCACCAATGA 2220 42.79 MAAQSSNSKFLLICSFFLINISLFLSTLPFASSLSFNFTSFNPSNTDIIYDRAFPTNQAIELTGGDANMDYVGRAMYSQPLHLWDKVSGNLSSFQTNFSFVIDSRQKSTYGDGLTFFFAPVGSKFQANISRGSGLGIGYDPELTNATATFFAVEFDIYSNLFDPPEKLEHVGIDISSMRSIAYSIWKCDIKGGKKNHVWIKYDSVNHNLSITFTGFDLNGSILFQHLHHVVDLRLHLPERVTFGFSASTGYAYATHTVYSWSFESTLDLTLNPNFTSSSNLSPRPEPSPEPSPEPSPAESILESIPEPRPNLHPSHSNGSKAGLAVGLGVVGAAIIVGGLVLVWIAVWKKRMAMRKNIEEEIMLDDSEFERGKGPRRFSYKELARATNNFKEDKKLGKGGFGDVYKGFLSDLNCDVAVKRISKGSKQGIKEYASEVKIISQLRHRNLVQLIGWCHEKSKLLLVYEFMPNGSLDAHLFKENNFLTWECRYRIAQGIASGLLYLHEEWEKCVVHRDIKSSNVMLDSSFNAKLGDFGLARLVDHNKGSQTTLLAGTIGYLAPECATTGRASKESDVYSFGMVALEIACGRKPFDPNAEDEKIVMVEWVWKLYGCGKLLEGIDSKLIQERFEDEQQKEEQMERLMVVGLWCAHPDSNCRPSIRQAINVMNFEAPLPLLPSQLPVPTYEFLPIRRPNASSSPSSSATQNSVASHTINSSNFSNVVSSSSHSAASSIHLLQHVHQ 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6001254 6003473 + CmoCh19G005050.1 Cmo19g00505 403665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00505 739 PANTHER - 21 724 - -
Cmo19g00505 739 ProSiteProfiles Protein kinase domain profile. 390 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00505 739 CDD lectin_legume_LecRK_Arcelin_ConA 34 267 IPR001220 GO:0030246
Cmo19g00505 739 CDD STKc_IRAK 396 660 - -
Cmo19g00505 739 ProSitePatterns Legume lectins alpha-chain signature. 237 246 IPR000985 -
Cmo19g00505 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Cmo19g00505 739 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 268 IPR013320 -
Cmo19g00505 739 Gene3D Phosphorylase Kinase; domain 1 375 466 - -
Cmo19g00505 739 Pfam Protein kinase domain 390 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00505 739 MobiDBLite consensus disorder prediction 277 318 - -
Cmo19g00505 739 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 21 724 - -
Cmo19g00505 739 Gene3D - 31 274 - -
Cmo19g00505 739 SMART serkin_6 390 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00505 739 Pfam Legume lectin domain 33 268 IPR001220 GO:0030246
Cmo19g00505 739 Gene3D Transferase(Phosphotransferase) domain 1 467 685 - -
Cmo19g00505 739 ProSitePatterns Protein kinases ATP-binding region signature. 396 419 IPR017441 GO:0005524
Cmo19g00505 739 SUPERFAMILY Protein kinase-like (PK-like) 375 704 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00505 - - - cmos:111455560 1368.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00913 Cmo-Chr4:4592346 Cmo19g00505 Cmo-Chr19:6001254 6.43E-133 dispersed
Cmo11g01451 Cmo-Chr11:10206715 Cmo19g00505 Cmo-Chr19:6001254 2.74E-172 dispersed
Cmo16g00798 Cmo-Chr16:4065597 Cmo19g00505 Cmo-Chr19:6001254 0 dispersed
Cmo19g00505 Cmo-Chr19:6001254 Cmo06g00285 Cmo-Chr6:1423945 3.60E-126 dispersed
Cmo19g00505 Cmo-Chr19:6001254 Cmo19g00508 Cmo-Chr19:6018940 2.67E-167 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g907 . . . . . . . . Cmo19g00505 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00683 Csa07g00618 . Cme01g00183 . . . . . . . . . . . . Cma19g00488 . Car19g00365 . . . . . . . . . . . . . . . . . . Chy01g00191 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000150 2 7 3 2 2 5 6 4 4 9 8 5 7 10 9 7 6 7 5 4 9 4 4 5 5 9 3 2 3 2 158
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75099 PF00069 Pkinase 1.60E-52 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00505 Cmo_Chr19 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0