Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00508 ATGTCTCCCATGGAGGTCTCTATGCTCACCTCTCCAAACCTTTTCCTCCTAATCTTCTGCTACTATAGCTTCTTGTGGAGTATAACCAACCCAGTTTCAGTCTCAGCCACCATTTCTTCTGAGAACTTAACGTTCAGCTTCGTTGGTTTCGACCCGAATGGCCACGACATTCATTACGAAGGAAATGCATACTCTTCCAACAATGTCATTCAGCTTACCATGAACCAGAGAGACATGCCTCTCGATGGAAGTGTTGGTCGTGCTACCTACAAAGATCCTCTCCATCTTTGGGAGAGTGTCCACAAGAATCTTGCAGACTTCACCACCAACTTCTCCTTCTCAATCGACTCACAGGGAAGTCACCCTTATGGCGATGGCTTTGCCTTCTTCCTCGCCCCAAATGGCTCGAGTCTTCCGCATTACTCAGGAGGTAGGAACTTTGGTCTCTTGAATTCCAACAAGAGTGATCTAGAGTACTCAACACCAACATCAACAGCCAACAATTTCGTTGCTGTTGAGTTTGATACCTACTCGAATGTATTATCGGAGGATCCGGGGGGGAATCACATCGGCATCGATGTAAACTCCGTTATATCTCAATTCACTACTTCATGGTGGTGGAGTGACATAGAACACGGTGGGAAAGTTCAAGCAGTGATAAGTTACAATTCAACCTCCCACAATTTGACTGTTTTTCTAGTTGATGAAGGAGATTCTGAAGTTTCTCCAAGAAACTCCTCTAGCTTCTCTTTCAATATTGATTTAAGAGAGCATCTACCAGAATGGGTTACGATCGGTTTCTCGGGATCGACCGGAAATCTATTCGAGATTCATACGATTAGCTCGTGGAGTTTCAACTCTAGATTACAAGTTGAAGTGAATGTTACCACCACAACTGATCCAGCTAGCTCTCCAGTTCACTCCACTATAGGAATTTCCATGAAATGGCTCATGATAATCTTGGAAGTGGCACTTCCACTCATTCTAATCTTGGGGTTTGCTTGGTTTTGGATATGGATCATGAAGAGAACCATTAGAAGAAGAAGCCTGAGAAGGGACCAAGAGGAAGATCTTGAGAACGAAACAGGGCCAAGGAAGATTTCATATAAAGATCTATCAGAAGCAACCAACAAATTCAGTGATGAAAATCTATTGGGAGAAGGAGGATTCGGGAAGGTATACAGAGGATTTCTAGACAACAGGGAACTTGATGTAGCAGTGAAGAGAATCACTCCAAACAACCTCCATCAAGGCTCAAGAGAATTTGCATCAGAAGTGAAAACAATCAGCAAATTAAGGCATAAGAACTTGGTAGAACTGATTGGATGGTGCTGCAGCAGGAACGAAGAATATCTCATAGTCTACAAATTCATGCCAAACAAGAGCTTAGATTTCCATCTATTTCAGCAAAACAATCTCCTAACATGGAATCACAGATACAGAATCACAGTAGGTTTAGCCTCGGCACTACACTATCTACAAGAAGAACAAGATCCATACGTTCTACACAGAGATATAAAATCAAGCAATATCTTACTAGATGCCGAATTCAACGCGAAACTCGGCGATTTCGGGCTTGCTAAACTCGTAGATCGTGGAAAACCATCAACATCCACCACGCTACGAGGAACAGAAGGTTATGTAGCACCAGAGTACCTGCAAAGCAGCATTTCAAGTAAAGAATCCGACATCTACAGCTTCGGCATCGTGTGTTTGGAAATCGCCTGCGGAAAACGAGCCCTAGGTGAAACGAGAGAAGACGGAAGGAAATGTTTGATAAAGCTAGTTGAATGGGTGTGGGATTATTACCGACGAAGGAGTGTGATTGAGGCCGCGGATCCAAAATTGCGCCAAATTTTCAAAAGAGATGAGATGAAGCAACTGTTGATCGTCGGACTTGCTTGCGCTCAGCCCGATTTCTGTCTGCGGCCTTCGATCAAACAGGTGATCGACATGCTTAACTTCAAATCTCCATTGCCGAATCTGCCATTGGAATATCCCGGATTCTCGACATCTGCGGTGTTTTTGAGTGCGCAAATGGAATCATTATGTTCATCGGCGTGTTCAGAGAACGGTAATCTCCATGGCAATAGCATATCTTCCAAGATTTCCACAGCTTCTTCCACATTTTCGAATTTGGGATTATTTCGATCTCAACTGTGA 2163 43.55 MSPMEVSMLTSPNLFLLIFCYYSFLWSITNPVSVSATISSENLTFSFVGFDPNGHDIHYEGNAYSSNNVIQLTMNQRDMPLDGSVGRATYKDPLHLWESVHKNLADFTTNFSFSIDSQGSHPYGDGFAFFLAPNGSSLPHYSGGRNFGLLNSNKSDLEYSTPTSTANNFVAVEFDTYSNVLSEDPGGNHIGIDVNSVISQFTTSWWWSDIEHGGKVQAVISYNSTSHNLTVFLVDEGDSEVSPRNSSSFSFNIDLREHLPEWVTIGFSGSTGNLFEIHTISSWSFNSRLQVEVNVTTTTDPASSPVHSTIGISMKWLMIILEVALPLILILGFAWFWIWIMKRTIRRRSLRRDQEEDLENETGPRKISYKDLSEATNKFSDENLLGEGGFGKVYRGFLDNRELDVAVKRITPNNLHQGSREFASEVKTISKLRHKNLVELIGWCCSRNEEYLIVYKFMPNKSLDFHLFQQNNLLTWNHRYRITVGLASALHYLQEEQDPYVLHRDIKSSNILLDAEFNAKLGDFGLAKLVDRGKPSTSTTLRGTEGYVAPEYLQSSISSKESDIYSFGIVCLEIACGKRALGETREDGRKCLIKLVEWVWDYYRRRSVIEAADPKLRQIFKRDEMKQLLIVGLACAQPDFCLRPSIKQVIDMLNFKSPLPNLPLEYPGFSTSAVFLSAQMESLCSSACSENGNLHGNSISSKISTASSTFSNLGLFRSQL 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6018940 6021102 + CmoCh19G005080.1 Cmo19g00508 403668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00508 720 PANTHER - 56 671 - -
Cmo19g00508 720 CDD lectin_legume_LecRK_Arcelin_ConA 43 289 IPR001220 GO:0030246
Cmo19g00508 720 ProSitePatterns Protein kinases ATP-binding region signature. 385 408 IPR017441 GO:0005524
Cmo19g00508 720 Gene3D - 40 299 - -
Cmo19g00508 720 SMART serkin_6 379 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00508 720 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 56 671 - -
Cmo19g00508 720 ProSitePatterns Legume lectins beta-chain signature. 170 176 IPR019825 -
Cmo19g00508 720 Gene3D Transferase(Phosphotransferase) domain 1 458 667 - -
Cmo19g00508 720 SUPERFAMILY Protein kinase-like (PK-like) 363 668 IPR011009 -
Cmo19g00508 720 Pfam Legume lectin domain 43 293 IPR001220 GO:0030246
Cmo19g00508 720 CDD STKc_IRAK 385 654 - -
Cmo19g00508 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672|GO:0006468
Cmo19g00508 720 ProSitePatterns Legume lectins alpha-chain signature. 259 268 IPR000985 -
Cmo19g00508 720 ProSiteProfiles Protein kinase domain profile. 379 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00508 720 Pfam Protein kinase domain 380 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00508 720 SUPERFAMILY Concanavalin A-like lectins/glucanases 42 289 IPR013320 -
Cmo19g00508 720 Gene3D Phosphorylase Kinase; domain 1 341 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00508 - - - csv:101209022 1125.15
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01451 Cmo19g00508 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00508 Cmo-Chr19:6018940 Cmo06g00285 Cmo-Chr6:1423945 2.63E-115 dispersed
Cmo19g00505 Cmo-Chr19:6001254 Cmo19g00508 Cmo-Chr19:6018940 2.67E-167 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g905 . Blo03g00035 Bda06g01133 . . . . . Cmo19g00508 Cmo11g01451 . . . . . Cpe04g00360 Cpe15g00386 Bhi05g00956 . . . . . . . . . . . . . . . . . Lsi03g00681 Csa07g00619 . Cme01g00179 . . . . . . . . . . . Cma11g01676 Cma19g00490 Car11g01167 Car19g00367 . . . . . . . . . Cla09g01596 . . . . . . . . Chy01g00189 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013790 0 1 0 0 0 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 1 2 1 0 0 1 1 0 1 0 20
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75100 PF00069 Pkinase 1.90E-44 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00508 Cmo_Chr19 FPKM 4.089276 5.29965 15.520372 16.145147 129.082932 140.786301 135.074738 19.655771 22.121674 21.964235