Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00510 ATGAATAGGAAAAATTCAGGAGAATTCTTTTATACAATGGACGGTAAAAAAAGAGGCTCTAACCCAACAGATGGAGTGGAGATCCAGAAAGATACATTGATGGTTGACGTTAGTGCTGTTCCAAAATCCTTAAAGAGAAAAATGAAGAAGGATAAACAGAAAGACGCTGAACTGGAAAATGGGGATGTTGATGTTTCCTCTTCTTCCTTCCCCGATTCTGAGAAACCAATGGAGAGAAAAAAGAAAAGGAAAACATTTGACAAAGAAAGAAAGCGAGCTGTTTCGGAAAGTGAAGAACCTAAGGCAAAACAAACAAGTGTAAAGGTTAAAGCTGATGAGACTAAGCCGTCTTCTGTCTCTGTTTCAAGCAGTGGTCTCCCAGAGTTTCATATCAGTGTTTTTAAGGACTTGGCATCTGCTGACATTTTGGTGAGAGAATCAGCTGCAGAAGCTTTGGCAACTGAGCTGCTAAAGGTTCAACAAGCATATGAAAAGCTTGAAAATAAGGATTTGGTTGAGGGTGGATTAAAACTGGAAGCTGAGAAGGATGATGGCTTGGATAATTGTGCCCCATCTGTGAGATATGCTGTACGTAGACTTATTCGAGGCGTGTCTTCTTCGAGAGAGTACAATAAGTGGATAACATTCCAGACTATCATCATAAAGTTTCAGGTTCGAGGCCAATGTAAAAAATTTTATTACAATTTCTTCAAGAATGCCATAACAAAAAAGTGCAATGATGAAATTAGCTATATAAATGTCTATTCTCGAAGTTACAAAGTACAGTGGGGGTTTGATTTTCTCATATTATTCTATTTATGTGCTAGACAGGGTTTTGCCTTAGGATTAACTGCATTGATAGGTACACAGTCCAACGTCAAGGTGGACTCGTTGCTGAAACTTATTACTAATATATTAGAGGTTTCTTCATCAATGAAGGGCCAGGAAGCGAGGGACTGTCTTTTGGGTCGCTTGTTTGCATATGGGGCTCTTGTTCACTCAGGAAGACTAACTGAAGAATGCTCTTCTGATAAAAACTCTTCACATGTGAAGGAAATCACCAGTGTTCTTATATCTCTTGCAGCTAAAAAACGTTATCTGCAAGAGCCAGCTGTCTTAATTATTGTAGAATTGGTAGAAAAGTTAACACCCGAGTCAGTGTTGAATCATGTGCTTGAGGCTCCTGGAATTCAAGAGTGGTTTGAAGCAGCTACTGAAGTTGGGAACCCAGATGCACTGCTGTTGGCTTTAAAATTACGAGAAAAAGTTTCTGCTGATTGTCCAACATTAGTTAAACTTTTACCAAATCCATTCAATCCTAGTAGATTCTTTTCTGTTGATCACCTGTCATCCCTAGTCAACTGTTTCAAGGAGTCTACTTTTTGCCAGCCCAGAGTTCACAGCTTATGGCCTGTTCTGCTAAACATTTTGTTGCCTGATACAGTTTTGCAAGCTCAAGATGCATTGTCTGTTTCAATCTCATTGAAGAAGCATAAAAAGAACCGTAAAAGTGGCTCCTCTGAAGAAGAAATTCTGGTAAACTTTAAAAACTTTTTTGAAGTTGTAATTGAAGGAGCACTTCTGCTATCATCTCATGATCGTAAGCACTTGGTGTTTGATGTTCTACTTCATCTACTGCCAAGACTGCCAGCAAATTTTATCCCTGCTATGCTGTCATATAAAGTTGTCCAGTGCCTGATGGACATACTTTCAACGAAGGATTCTTGGTTGCATAAAGTTGTGCAGAATTTTCTAAAAGAATTATCTGAATGGGCACTGCATGATGATGTCAGAAAAGTTTCCGTTGTTGTGGCTTTACAGAAGCACAGCAATGGCAAGTTTGATAGTATTACACGAACAAAAGCAGTTCAACACTTGATGTCCGAGTTTAAGACAGAATCGGGTTGCTTTCTGTTTATTCAGAACTTGATGAGCATGTTTGTGGATGAAAGTCAAACATCAGAGGAACCTTCAGATCAAAGTCAAACAACTGATGACAACTCAGAGGTTGGTTCGGTTGAGGATAAGGATTCCATTGGAACAATGGGAAACTCTGATTTTTTGAGAACTTGGATTATAGAATCTCTACCATGTATGTTGAAACACTTAAAGCTGGAACCTGAAGCAAAATTCCGAGTGCAGAAAGAAGTTTTGAAATTTCTAGCCGTCCAGGGTTTGTTCACTGCATCGCTTGGCACAGAAGTGACATCTTTTGAATTGCAGGAGAAATTTAAGTGGCCAAAAGCTCCCACATCTAGTGCTCTTTGCATGATGTGTATTGAACAACTGCAGTTATTACTTGCTAATGCTCAAAAGGGCGAGGGATCTCATGGTTTGGTTAATGGTCTTGAGCCAAATGATCTTGGCTCTTATTTTATGAGGTTTCTCAGTACTTTACGCAACATTCCTTCAGTTTCTCTATTCCGTCGCCTGAGTGACGAGGATGAAGATGCATTCAAGAAACTACAAGAGATGGAAACCAGGTTATGGAGAGAGGAAAGGAATTACGGATTAAGTGCTGATGCAAACAAATTGCATGCACTGAGGTACTTGCTCATCCAATTGCTTTTGCAAGTGCTCCTTCGACCAGAGGAATTTACTGAGGCTGCAACAGAATTAATTATATGTTGTAAGAAAGCCTTTTCTTCTGCTGATCTACTAGGCTCCTCTGGAGATGATGAGTTGGATGGTGATGGAACACCGCAGTTAATGGATGTTCTTGTGGACACATTGCTCTCATTGCTACCACAGTCATCGGCACCCATGAGGTCTGCCATTGAGCAGGTGCGTGCAAGGCTGAATGTTACAAATTGTGTATACTATAATTACTCCCATCTAGTTATTGTTTCAAATGAAATTCGCTTTTTTATGTACACACATGTTGCATACTCAAGGGGAGGGGACAAGTCAGATATTTTTGGGGAGATTGTTAAAATCCTTTTTTTCTTCTTGGTGTTTACCGATGATACTTTCTTCATATCTATGCCAAAAACATATTTATCTTATTTGGATGTATGGCTTGATTTCTTCTTCTTAATGATAACGTTTTCCTGCTTGCCCTGTGGTGTAAATTACCCGTGTCGCTCTGTTTTCAAGTACTTCTGTTGTGATATCACTGATGATGGGCTGATGAGAATGTTGAGGGTTGTCAAGAAAAATTTGAAACCTTCGAGACATCACAATGCAGAGGATGGAGATGAGGATGAGGATGAAGATGAGGATGGAGATTTTCTTGATGTTGAAGATGAGGAAATTAATCAAGATGAAGATAGTGATGAACATACTGATGAATCTGAAGCCATAGATAAAGTTGGAGAAGTAGGTCAAGAACATTCTGACGGTTCTGATGATTCTGAATCTGATGGAGGAATGGACGATGATGCAATGTTTCGAATGGACTCTTATCTTGCCCAAATCTTCAAAGAGCGAAAAAATCAGGCTGGGAGTGAAACTGCTCAGTCTCAGCTTATGTTATTCAAGCTTCGTGTGCTGTCACTTCTGGAAATCTACTTGCATGAAAATCCAGGCAAACCAAATGTTTTGTTAGTGCTCTCAAATTTGGCTCAGGCATTAGTTAACCCTCATACTACAGAAGGTAGCGAACAGCTTGAACAGCGGATATGGGGAATTTTGCAGAAAAAGATTTTCAAAGCAAAAGACTATCCGAAGGGCGAAGCGGTTCAAATGTCCACGCTTGAAAATTTGCTGGAGAAAAACCTAAAGTTGGCTTCAAAACCAACCAAGAAAAAGAAATCTGCTGCAAATGTATCAAAAAAGAAGCAGACAGCATCATTGAATCATTACAAGATGATCACTTCCCTGGGTCAGAATTCATCATTTTGGATCCTGAAGATTATTGATGCAAAAAAAGTGTCCAAGCCTGAACTACAGAAAGTATTTGATATTTTTGATAAGGTTTTGGTGGATTATTTTCATAGTAAAAAGTCTCAGATAAAGGCCGAATTTCTGAAAGAGATAATTCGAAGAAGGCCATGGGTTGGACATCATCTTTACGGTTCTCTTCTCGAGAGATGTGTCAGTACAAATTCGGAGTTTCGGCGAATCGAAGCGTTAGATCTAATAACTGAGATGATAAAATCATCAATGTCTTCTGAAAATGGACATCATGTGACAAAGGAACTGATGGAGAACTTCCTGCATGAACTATGCAATTTGATAAAGGAGTTACTGACAAATATGCCTGAAAAGCAGGCACGACGGGCTGATGTACGCAAGTTTTGTGGCAAGATTTTCCATTTCGTATCCTCCCTTAACATTAGTAAGTCTTTCCTTTCGAGCTTGGCTCCCGAAGCTGTAGCGGTATGCGAATCTCAACTCGGCGAGCAGTTCAGTAAATTGAAGCAATTGAAGCATCGTGAATGA 4383 39.54 MNRKNSGEFFYTMDGKKRGSNPTDGVEIQKDTLMVDVSAVPKSLKRKMKKDKQKDAELENGDVDVSSSSFPDSEKPMERKKKRKTFDKERKRAVSESEEPKAKQTSVKVKADETKPSSVSVSSSGLPEFHISVFKDLASADILVRESAAEALATELLKVQQAYEKLENKDLVEGGLKLEAEKDDGLDNCAPSVRYAVRRLIRGVSSSREYNKWITFQTIIIKFQVRGQCKKFYYNFFKNAITKKCNDEISYINVYSRSYKVQWGFDFLILFYLCARQGFALGLTALIGTQSNVKVDSLLKLITNILEVSSSMKGQEARDCLLGRLFAYGALVHSGRLTEECSSDKNSSHVKEITSVLISLAAKKRYLQEPAVLIIVELVEKLTPESVLNHVLEAPGIQEWFEAATEVGNPDALLLALKLREKVSADCPTLVKLLPNPFNPSRFFSVDHLSSLVNCFKESTFCQPRVHSLWPVLLNILLPDTVLQAQDALSVSISLKKHKKNRKSGSSEEEILVNFKNFFEVVIEGALLLSSHDRKHLVFDVLLHLLPRLPANFIPAMLSYKVVQCLMDILSTKDSWLHKVVQNFLKELSEWALHDDVRKVSVVVALQKHSNGKFDSITRTKAVQHLMSEFKTESGCFLFIQNLMSMFVDESQTSEEPSDQSQTTDDNSEVGSVEDKDSIGTMGNSDFLRTWIIESLPCMLKHLKLEPEAKFRVQKEVLKFLAVQGLFTASLGTEVTSFELQEKFKWPKAPTSSALCMMCIEQLQLLLANAQKGEGSHGLVNGLEPNDLGSYFMRFLSTLRNIPSVSLFRRLSDEDEDAFKKLQEMETRLWREERNYGLSADANKLHALRYLLIQLLLQVLLRPEEFTEAATELIICCKKAFSSADLLGSSGDDELDGDGTPQLMDVLVDTLLSLLPQSSAPMRSAIEQVRARLNVTNCVYYNYSHLVIVSNEIRFFMYTHVAYSRGGDKSDIFGEIVKILFFFLVFTDDTFFISMPKTYLSYLDVWLDFFFLMITFSCLPCGVNYPCRSVFKYFCCDITDDGLMRMLRVVKKNLKPSRHHNAEDGDEDEDEDEDGDFLDVEDEEINQDEDSDEHTDESEAIDKVGEVGQEHSDGSDDSESDGGMDDDAMFRMDSYLAQIFKERKNQAGSETAQSQLMLFKLRVLSLLEIYLHENPGKPNVLLVLSNLAQALVNPHTTEGSEQLEQRIWGILQKKIFKAKDYPKGEAVQMSTLENLLEKNLKLASKPTKKKKSAANVSKKKQTASLNHYKMITSLGQNSSFWILKIIDAKKVSKPELQKVFDIFDKVLVDYFHSKKSQIKAEFLKEIIRRRPWVGHHLYGSLLERCVSTNSEFRRIEALDLITEMIKSSMSSENGHHVTKELMENFLHELCNLIKELLTNMPEKQARRADVRKFCGKIFHFVSSLNISKSFLSSLAPEAVAVCESQLGEQFSKLKQLKHRE 1460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6033380 6043200 + CmoCh19G005100.1 Cmo19g00510 403670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00510 1460 MobiDBLite consensus disorder prediction 651 668 - -
Cmo19g00510 1460 MobiDBLite consensus disorder prediction 1103 1127 - -
Cmo19g00510 1460 MobiDBLite consensus disorder prediction 1 121 - -
Cmo19g00510 1460 MobiDBLite consensus disorder prediction 73 110 - -
Cmo19g00510 1460 MobiDBLite consensus disorder prediction 651 681 - -
Cmo19g00510 1460 SUPERFAMILY ARM repeat 295 1153 IPR016024 -
Cmo19g00510 1460 PANTHER MYB-BINDING PROTEIN 1A FAMILY MEMBER 274 929 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Cmo19g00510 1460 PANTHER MYB-BINDING PROTEIN 1A FAMILY MEMBER 1027 1455 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Cmo19g00510 1460 PANTHER MYB-BINDING PROTEIN 1A FAMILY MEMBER 111 211 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Cmo19g00510 1460 Coils Coil 149 169 - -
Cmo19g00510 1460 Pfam DNA polymerase phi 275 930 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Cmo19g00510 1460 Pfam DNA polymerase phi 1027 1171 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00510 K02331 POL5, MYBBP1A; DNA polymerase phi [EC:2.7.7.7] - csv:101209511 1131.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g866 . . . . . Bpe12g00719 . . Cmo19g00510 . . . . . . . Cpe15g00390 . . . . . . . . . . . . . . . . . . . Csa07g00644 . Cme01g00159 . Blo13g00201 Bda15g00482 . . . . Bma08g00031 . . . . . . Car19g00369 . . . . . . . . . Cla09g01618 Cam09g1534 Cec09g1780 Cco09g1863 . . Cre01g0781 . . Chy01g00167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007466 1 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00510 Cmo_Chr19 FPKM 10.262751 9.817713 11.814395 10.886783 10.275525 8.86237 9.061402 12.443011 13.225242 13.8059