Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00513 ATGGACAATTACGCGTACAATTCCTATGCTGAGTCCGGCGACTCCTCCCCTCGCTCCCGCGAGATTGATTTCGAAAACCCTCCTCCATGGGACGACGCCCAGCTCCAGAACCAGAACTACAAGGTCAAGTTCATGTGTAGCTATGGCGGAAAGATCCATCCACGTCCTCATGATAATCTCCTCTCCTACGTCGGTGGCGAGACTAAGATCTTTGCCGTCGACCGTTCTGTTAAGTTTGCTTCCATGCTTGCTAAGCTTTCTTCGCTCTGTGATACTGACGTTACCTTCAAGTACCAGCTCCCTGGCGAGGATCTTGATGCGCTGATTTCGGTTACCAATGATGATGATCTCGAGCATATGATGCACGAGTACGATCGCCTCTATCGCGCTCCTGGAAAGCCCGCTCGGATGCGGCTTTTCCTCTTTCCGGCTAATCAGAGCCCTAGCTTTGGGTCTGAGGGAGGTAGATCGGATCGGGATCGATTTGTGGAGGTTTTGAGTTCTGGTTCTACCCATGGAGGTGATGTGCCTAAGCAATCTGTTCCGAATAAGGTGGATTTTCTGTTTGGTTTGGACAAGGGCGGAATCGCGTCTCCTCCTCCACCTGTGGCGCTCAAATTGCACGATCCGCTGCCTGAGCCGGTCGCTCCGCCGATGGAATCTGCTGCTCGACCTGTTCCGGGAGATCGGATCGCTGTATCGGATCCTGGGGTTCATCCGGCCGAGATTCAGCGTCAATTGCAGGAATTACAGAGGTTGCATATTAGCGAACAGGAGCAAGCCGCGGCGTATCGGAGGAAACCTGAAGAGCATAATCTTATGGGAGGTTACGGCGGCGATTTCTACGCGCAGAAGATGGTGGAGAAGACTCCACCGCCGAGCGCGCAACCGACCTTGCAGCCACCGGCTGGATACTGGTCGGAGAAGCAGGTTTCCAGCGGAGGTTTCCCGGCGACGATGACGGCCACACCCGGTGGACAAGACCAACCGCCTGTCTACATGATCCACGCTCCCGGTGCGGTCTATCACTCGCCCCAACATCCGATGGTGAGACAAGTTACCGCTCCCCCGCCCAATCAAGGCTACTACGCTGTACAGCGTATGGCCTCAGATGTGTACCGTGAGCAACCGGTCTACAATGTTGTACAACCTCCACAACCATCTTATCCGCCCACTTCATCGCCGTCTCTGCCGCAACAACCTCCGAAGGTCGCCGCCTATCCCGGAGGCGGTATAACTCTTGCAGCAGATTCAGGGCCTTACACACAGGTGGCCTACGACAGCACCACCGGGAGACAAGTATACTACACAGCCGGTGGAGCCGCCATGGTAGCATCGCCTCCAACGCCGCCATACCAGGGGGTGTCGGCGCCGATGAGCGGCGATATTAGAACAGGACCAGTGGGACAGGATGGGAAGCTGATTGCAAAAATTTCACAAGGCTCAGTTTGA 1452 55.37 MDNYAYNSYAESGDSSPRSREIDFENPPPWDDAQLQNQNYKVKFMCSYGGKIHPRPHDNLLSYVGGETKIFAVDRSVKFASMLAKLSSLCDTDVTFKYQLPGEDLDALISVTNDDDLEHMMHEYDRLYRAPGKPARMRLFLFPANQSPSFGSEGGRSDRDRFVEVLSSGSTHGGDVPKQSVPNKVDFLFGLDKGGIASPPPPVALKLHDPLPEPVAPPMESAARPVPGDRIAVSDPGVHPAEIQRQLQELQRLHISEQEQAAAYRRKPEEHNLMGGYGGDFYAQKMVEKTPPPSAQPTLQPPAGYWSEKQVSSGGFPATMTATPGGQDQPPVYMIHAPGAVYHSPQHPMVRQVTAPPPNQGYYAVQRMASDVYREQPVYNVVQPPQPSYPPTSSPSLPQQPPKVAAYPGGGITLAADSGPYTQVAYDSTTGRQVYYTAGGAAMVASPPTPPYQGVSAPMSGDIRTGPVGQDGKLIAKISQGSV 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6058440 6059891 - CmoCh19G005130.1 Cmo19g00513 403673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00513 483 MobiDBLite consensus disorder prediction 381 405 - -
Cmo19g00513 483 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 1 470 - -
Cmo19g00513 483 MobiDBLite consensus disorder prediction 383 402 - -
Cmo19g00513 483 Gene3D - 62 143 - -
Cmo19g00513 483 PANTHER OS05G0427100 PROTEIN-RELATED 1 470 - -
Cmo19g00513 483 MobiDBLite consensus disorder prediction 1 15 - -
Cmo19g00513 483 MobiDBLite consensus disorder prediction 1 31 - -
Cmo19g00513 483 SUPERFAMILY CAD & PB1 domains 57 149 - -
Cmo19g00513 483 Coils Coil 247 267 - -
Cmo19g00513 483 SMART PB1_new 56 144 IPR000270 GO:0005515
Cmo19g00513 483 Pfam PB1 domain 61 143 IPR000270 GO:0005515
Cmo19g00513 483 CDD PB1_UP2 45 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00513 - - - csv:101208862 827.394
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00849 Cmo19g00513 CCT
Cmo16g01146 Cmo19g00513 CCT
Cmo16g01146 Cmo19g00513 ECH
Cmo06g00849 Cmo19g00513 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00588 Cmo-Chr5:2907810 Cmo19g00513 Cmo-Chr19:6058440 4.05E-87 dispersed
Cmo10g00335 Cmo-Chr10:1498289 Cmo19g00513 Cmo-Chr19:6058440 1.06E-34 dispersed
Cmo12g00136 Cmo-Chr12:854566 Cmo19g00513 Cmo-Chr19:6058440 5.19E-81 dispersed
Cmo18g00771 Cmo-Chr18:9293870 Cmo19g00513 Cmo-Chr19:6058440 4.93E-32 dispersed
Cmo18g01003 Cmo-Chr18:10940711 Cmo19g00513 Cmo-Chr19:6058440 1.39E-36 dispersed
Cmo11g01449 Cmo-Chr11:10197743 Cmo19g00513 Cmo-Chr19:6058440 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g571 . Blo03g00134 Bda06g01305 . . Bpe07g00201 . . Cmo06g00849 Cmo16g01146 . . . . Sed05g2359 Cpe14g00907 . Bhi11g00093 Tan01g2116 Cmetu06g0894 . Hepe06g1074 Mch10g1606 . Cla10g00203 Cam10g0209 Cec10g0214 Cco10g0215 Clacu10g0212 Cmu10g1055 Cre10g0463 . . Cone6ag0628 Cone9ag0631 Lsi07g01244 . . Cme06g02515 . . . . . . . Bma12g00195 . . Cmo19g00513 Cma06g00826 Cma16g01097 . Car16g01039 . . . . . . . . . . . . . . . . . Csa03g00218 Chy06g02102 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007434 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00513 Cmo_Chr19 FPKM 3.556979 3.757143 4.823191 5.62549 3.553784 2.983885 3.167712 3.015608 3.212823 2.890545