Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00518 ATGTACATTTTGGTGACGTGTAATCCCATTCTATCTTCCCAATTTCTCTCGCTGCATGACAAATTCCTGCAATCAAATGTTTCTCAAATTGGGGGTGTTGGAATTACGAGTTTAGGCAATATGTTGGAGCCGATTAGTTGCTGCCAGAGCTCTCACTCCCAGATTTATAGTGCAGTTAAACAGAAGAATTCTTTCATGGCCTACTCTCATACTGTTCATCAACTTTGTGGGTCTTCCTTCAACTTACATTATCCACACTCGAAAGTCGCCGTTCCATCATGCACCATAAATTGCTGGAGGAATGGTTATTCTTTAGTCCACAGCAGTACTGCTACGGTAACGTTCAAAGTCGTTGGACCGAATGGATACAGTTGGTTTAATCATAGGCCTAAACGGAGGGAAAGATTAAGAACGCGTGCAGCGCTTGATGTTGCAGCTGCTGTAGATGTCATCAATGATTTAGGATTGGATACATTGACATTCCTAGCTGTGACTGTCGTAGTTGTTCCTCTATTTAGGAGAATTAAGGCTAGCCCTATACTCGGTTTCTTCTTCGCTGGGATTGTACTTAATCAACTTGGCGTGATTAGAAATATTGTAGATGTTAAAGTTTTGTCCGAATGGGGAATACTTTTCCTGCTGTTTGAGATGGGTTTGGAGCTTTCATTTGCACGTCTAAAGGCTCTTGCGCGGTTTGCTTTTGGCATGGGTTTGACACAGGTCATATTATCTACTATCGCTTTCACTGCATTTGAACTTCCTCCTAATGGGGCTATTGGTACAAAAATTTTGGTGTTCCTTTTTCACGCCAGACCCGACTTGGTTAACATCAGAAGCGTTGATGAAGCTGTTGTGATTGGTGCAGCTCTTTCTCTATCTTCTTCAGCTTTTGTTTTACAGCTTCTTGCAGAGAAAGGAGAGCTCGCGACAAGATTTGGCTCGGCAACTCTAGGGATACTTCTTCTTCAGGATATTGCTGTTGTCCCTCTCCTGGTCATACTTCCCGTCCTTGAGAGCCAGAATTTGGGCACGGAAAGTATCTGGCCGATGCTTGCACAAGAAAGTTTGAAGGCTTTAGGTGGCCTGGGTCTGCTGTCCCTTGGAGGAAAGTTGATTCTTAGGCGAGTTTTTGAGGTTGTCGCGGAAGCAAGAAGCTCAGAGGCTTTTGTGGCCCTTTGCCTGCTGACTGTTGCTGGCACTTCGCTAATCACTCAGAAATTGGGCTTTAGTGATACGCTGGGAGCATTTTTGGCTGGGGCAATATTAGCAGAAACGAACTTCCGGACACAGATTGAAGCAGATATTCGGCCATTCCGGGGCTTGCTCCTTGGGTTATTCTTCGTTACCACAGGGACATCGATCGATATCCAGCTCCTGTTCCGAGAATGGCCAAATGTTCTTGCACTTTTGGCAGGTTTAATAGCAATCAAGACCCTTATAATAACAGCAATAGGTCCCCGTGTCGGCCTCACTACTCAAGAAAGCGTAAGAATAGGCTTTCTTCTATCTCAAGGAGGCGAGTTCGGATTTGTAGTGTTTTCTCTGGCAAACAGGCTTGGAGTGCTACCACTCGAGTTAAACAAGCTGCTCATCATTATTGTTGTGTTGTCAATGGCTTTAACTCCCTTGCTTAATGAAGCTGGACGAAAAGCATCTGAATTCATCAGTGAAAACTACAAGACAGAGGATAAAGCTGCAGATACGGTGAATTTTGACGCTACCGAACCCGTTGTCATTGTTGGATTCGGCCAAATGGGTCAGGTCCTGGCTAATTTCTTATCTACACCTTTGGTATCCGGGGCAGATCGCAATACTCCCGGATGGCCATATGTCGCATTTGACATTGATCTTTCCGTCGTGAAGACGTCTAGAAAGCTGGGTTTTCCTGTTCTCTATGGAGACGGATCACGACCAGCAGTTTTGCAATCAGCTGGAATCTCTTCTCCAAAAGCTGTCATGGTTATGTTCACAGAGAAGAAGGCGACAATCGAGGCTGTTCAGAAGCTTCGGCTTGCTTTCCCAGCTATCCCAATTTACGCCCGAGCAAAAGACGTGGTGCATCTATTAGACTTAAAGAATGCAGGTGCGACGGATGCTATTTTGGAAGACGCTGAGACTAGTTTACAACTCGGGTCGAAGCTTTTGAAAGGGCTCGGCGTCATGTCCGATCAAGTGTCTTTTCTCAGTCGGATGGTTCTAAACTCCATGGAAATACAAGCTCAAGATGCACTTGACAAATCCAATGAGCAAGAGTTGGAGATTATGAAACCGCTGCAGATACGCGTCAAGGACTCGATCGAGTCCCCTGAGAACGAACTGTCGAGGCTGAACCGGGAAGATAATACTCGGATCTTAAACGGAAAAGAGGTGGATCAAATGAAGCAAGATGAAGATCTAGATGGAAAGGGAGTCCTGTACTGTGAACTCGATACAGACAACAACCGCCAGCCACTTTGA 2457 45.3 MYILVTCNPILSSQFLSLHDKFLQSNVSQIGGVGITSLGNMLEPISCCQSSHSQIYSAVKQKNSFMAYSHTVHQLCGSSFNLHYPHSKVAVPSCTINCWRNGYSLVHSSTATVTFKVVGPNGYSWFNHRPKRRERLRTRAALDVAAAVDVINDLGLDTLTFLAVTVVVVPLFRRIKASPILGFFFAGIVLNQLGVIRNIVDVKVLSEWGILFLLFEMGLELSFARLKALARFAFGMGLTQVILSTIAFTAFELPPNGAIGTKILVFLFHARPDLVNIRSVDEAVVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGTESIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDIQLLFREWPNVLALLAGLIAIKTLIITAIGPRVGLTTQESVRIGFLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASEFISENYKTEDKAADTVNFDATEPVVIVGFGQMGQVLANFLSTPLVSGADRNTPGWPYVAFDIDLSVVKTSRKLGFPVLYGDGSRPAVLQSAGISSPKAVMVMFTEKKATIEAVQKLRLAFPAIPIYARAKDVVHLLDLKNAGATDAILEDAETSLQLGSKLLKGLGVMSDQVSFLSRMVLNSMEIQAQDALDKSNEQELEIMKPLQIRVKDSIESPENELSRLNREDNTRILNGKEVDQMKQDEDLDGKGVLYCELDTDNNRQPL 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6093556 6105130 + CmoCh19G005180.1 Cmo19g00518 403678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00518 818 ProSiteProfiles RCK N-terminal domain profile. 576 708 IPR003148 GO:0006813
Cmo19g00518 818 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 124 797 - -
Cmo19g00518 818 Gene3D - 153 553 IPR038770 -
Cmo19g00518 818 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 124 797 - -
Cmo19g00518 818 Coils Coil 733 753 - -
Cmo19g00518 818 Pfam Sodium/hydrogen exchanger family 161 545 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cmo19g00518 818 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 576 714 IPR036291 -
Cmo19g00518 818 Pfam TrkA-N domain 577 700 IPR003148 GO:0006813
Cmo19g00518 818 Gene3D - 576 746 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01120 Cmo-Chr6:8619829 Cmo19g00518 Cmo-Chr19:6093556 2.59E-07 dispersed
Cmo14g02083 Cmo-Chr14:15133237 Cmo19g00518 Cmo-Chr19:6093556 2.32E-86 dispersed
Cmo19g00518 Cmo-Chr19:6093556 Cmo18g01218 Cmo-Chr18:12098474 2.87E-29 dispersed
Cmo11g01447 Cmo-Chr11:10182273 Cmo19g00518 Cmo-Chr19:6093556 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00518 - - csv:101209266 1292.33