Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00526 ATGTCGATTTCCTCTCTGGGTTTCGACGAATTCAAGGTTTTCGACATTGTTAAGGGAATGGAGGACAATGGCTTTGTCAATCAGTGGCAGAAGAGCTCAATAGATGAGCTTGGCGTCCCATTAGCAGCAGCTTTTGGGGAGGATTTGCAGCATTCTTATGCTCAGTCAAACATCGATCAGAAGGCTTCTTTAAACCGTTCTCACAACGCCATACTCGGGTATGTGAAACAGCTCAAGAGTGATGGATGGAGTTCATATCAAACGAATAATCATTCGTCAAACTCACCAGTCGTTTCGTATCCGACCGCGTCTGTTTCGGCTTCCAACTACATGAACCAAATGGACTTCACGAGGCCGAAAGAGGAGGTCGTGTGTCCTCGGAGTATTAGCAACCTCCCTTCTGATATGTTGGTTTCTCAGGACACATTACGCCACCCGAGCCATGGAACGAAAAGTACCTCTACAAACAGTAGAATCCCACAGGCTCAAGATCACATTCTTGCAGAGCGGAAACGTCGAGAGAAGCTTAACCAGCGGTTTATCGCTTTGTCTGCTATAGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCAGTTCTTGGAGATGCCATTAAGTACCTTAAACAGCTCCAAGAGAAAGTGAAGATACTAGAGGAACAAACCCGCAGGAAAGACATCGAATCCGTGGTATTCATCAACACATCAAACGAGGAAGACGACCCACTTCCCGAGATCGAAGCAAGATTATGTGACAAAAACGTCCTTATAAGAATACACTGCGAGAAAAAGAAAGATGTCATAGAGAACACAGTTGCTGAAATTGAAAAGTTGCACCTTACAATAGTCAACAGCAGTGTAATGTCAGTTGGGAGTTATGCTCTCGACATAACCATTATCGCTCAGATGGATAACGAGTTCTGTATGACGTTAAAGGACCTCGTGAGAAAGTTGCAGTCGACTTTGCGCTCGTTCGAATGA 975 44.92 MSISSLGFDEFKVFDIVKGMEDNGFVNQWQKSSIDELGVPLAAAFGEDLQHSYAQSNIDQKASLNRSHNAILGYVKQLKSDGWSSYQTNNHSSNSPVVSYPTASVSASNYMNQMDFTRPKEEVVCPRSISNLPSDMLVSQDTLRHPSHGTKSTSTNSRIPQAQDHILAERKRREKLNQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVFINTSNEEDDPLPEIEARLCDKNVLIRIHCEKKKDVIENTVAEIEKLHLTIVNSSVMSVGSYALDITIIAQMDNEFCMTLKDLVRKLQSTLRSFE 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6152064 6155387 + CmoCh19G005260.1 Cmo19g00526 403686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00526 324 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 19 323 - -
Cmo19g00526 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 223 IPR036638 GO:0046983
Cmo19g00526 324 CDD bHLH_AtNAI1_like 162 234 - -
Cmo19g00526 324 Gene3D - 157 225 IPR036638 GO:0046983
Cmo19g00526 324 Coils Coil 199 226 - -
Cmo19g00526 324 SMART finulus 166 215 IPR011598 GO:0046983
Cmo19g00526 324 PANTHER BHLH TRANSCRIPTION FACTOR 19 323 - -
Cmo19g00526 324 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Cmo19g00526 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00526 - - - csv:101209844 535.028
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01441 Cmo19g00526 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00613 Cmo-Chr7:2760549 Cmo19g00526 Cmo-Chr19:6152064 5.67E-48 dispersed
Cmo07g00614 Cmo-Chr7:2765688 Cmo19g00526 Cmo-Chr19:6152064 2.04E-52 dispersed
Cmo19g00526 Cmo-Chr19:6152064 Cmo06g00657 Cmo-Chr6:3318070 6.73E-21 dispersed
Cmo16g00797 Cmo-Chr16:4058128 Cmo19g00526 Cmo-Chr19:6152064 9.33E-13 transposed
Cmo11g01441 Cmo-Chr11:10127297 Cmo19g00526 Cmo-Chr19:6152064 8.31E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g826 . . . . . . . . Cmo19g00526 Cmo11g01441 . . . . Sed10g1926 Cpe04g00344 Cpe15g00409 Bhi05g00987 Tan02g1087 Cmetu01g1268 Lac12g0126 Hepe02g0676 . . Cla02g00729 Cam02g0775 Cec02g0773 Cco02g0802 Clacu02g0770 Cmu02g0763 Cre02g1077 . Cone8ag1047 . . Lsi03g00644 Csa07g00647 . Cme01g00155 . . . . . . . . . . . . Cma19g00513 Car11g01157 Car19g00388 . . . . . . . . . . . . . . . . . . Chy01g00164 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000301 3 5 4 3 4 4 5 4 4 4 4 4 5 4 4 7 4 9 5 4 4 5 3 5 5 4 4 11 7 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11622 PF00010 HLH 1.80E-11 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00526 Cmo_Chr19 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0