Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00527 ATGTCTAATTCACTCAACCCTCCACCACTTCCCGCCGGCAAACACTCCGGCCGCCCCCCTTCTCTGGTGGGTCTCCGCCACTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTGTTCACTTTCTCTCTCCCATGGCGATGAACTTCAGCCACTTTTGGACCTCAAGTCCGCCCTCCACAACAACTCAACCTCCATGGCTCTTAGTTCTTGGGTAAGAGGGAAAGATGTTTGCAGCAGCTTCCATGGCATTGTCTGTGATTCCAATGGCTTTGTTGTGGAAATCAATCTCTCTGCTCATAACTTATCTGGGATTCTTCCTTTTCATTCCATTTGTTCTTTGCAGTCTCTTGAGAAGCTCTCTTTTGGTGGTAATTTTTTGTATGGGACAGTCAGTAATGCCTTGAGGAACTGTTCCATGTTGAAGTATTTGGATTTGGGACAGAATTTCTTTACTGGTGAAGTGCCTGATTTGTCTTCTTTGGAGAGATTAAGGTTCTTGAATTTGAATAACAGTGGTTTTTCTGGAGATTTTCCTTGGAAATCTCTTCTGAATCTTACTGATTTGGAGTTCTTGAGCCTTGGAGATAATTCATTTAACCCAACAACTTCATTCCCATCAGAGATTATTGAGCTTAACAAGCTTTATTGGCTTTACCTCTCTAACTGCAGCATTCATGGAGAAATCCCACCTGGGATTGGGAACCTCTCTCTGCTTGAGAATCTTGAGCTCTCACAAAATGAACTTACAGGTGAAATTCCTTCTCAGATTGTGAATCTCAGGAGGCTATGGCAGCTGGAGTTACACGAGAATTCCTTAACCGGGAAGCTTCCGATCGGGTTCGGTAACCTCACTGGACTGAGGAAATTTGATGCCTCTACTAATAATCTTGAAGGTGATCTTATGGAGTTGAGGTTCTTGACCAATCTGGAGTCCTTGCAGCTCTTTCAAAATCGATTTTCCGGTACGATTCCGGAGGAGTTCGGGGACTTCAAGGAGCTTGTTGAACTATCTCTTTACCAGAACAAGCTCACTGGCAGCCTGCCTCAAAGAATTGGATCTTGGGCAGCCTTCCTTTTCATTGATGTTTCAGAGAATTTCTTATCTGGACCTATACCTCCAGACATGTGCAAGCAGGGCAGTATGACTGTTCTCCTGATGCTGCAAAACAACTTCAGTGGTGGAATCCCAGAAAGCTATATGAACTGTAAATCTTTGAAGCGTTTTCGTGTAAGCAATAACTCTCTTTCAGGTGTCGTTCCTGCTGGGATTTGGAGTCTGCCGAATCTTAGCATCATTGATCTTTCAATGAATCAGTTTGACGGTCCAGTGACATCTGATATCGGTAAAGCAAAAGCTCTTGCCCAGTTATTCTTATCGAACAACCGGTTTTCTGGAAGACTACCGGCCGAGCTTGGCGAAGTATCGTCCTTAGTCTCGATCCAGGTCGATTTGAACCAATTTGTTGGTCCAATACCAGAATCACTTGGCAAGTTGAAGGTCTTAGACAGCCTTTCTTTGAACAACAACAAGTTTTCAGACAACATACCTAGCTCATTAGGCTCTTGCAGTTCTCTTTCTACCATAGATCTGTCTATGAATTCGTTCTCGGGGCATATTCCAGAGAATCTTGGATATCTGCCAATTCTAAACTCCTTGAATCTGTCGAACAACGAACTTTCAGGCGAAATTCCAACTAGTTTTTCACAGCTGAAGCTAAGCAGTTTCGACCTGTCTAATAACAGGTTAAGTGGCCAAGTACCTGAATCACTAGCAATCCAAGCCTTTGAAGAAAGTTTCATGAGAAATCCAGGCTTGTGCAGTGAGTCTATTAGATACTTGAGTTCATGTTCATCAACTTCTAGACCATCCAGCCACATCAGGTCGTTGCTGTCATGTACCATTGCTGGAATTCTAGTGTTGCTGCTCATGTCCTTCTTGTGCTTGTTGTTTGTTAAATCGAAACGTAACAATGCTAAGCATTTACTGAAATCCCGATCATGGGATATGAAGCCATTCCACATAGTTTGCTTCACGGAGAAGGAAATCATTGATTCAATCAATTCTCACAACTTGATAGGCAAAGGAGGATCTGGAAATGTGTACAAAGTTGTATTAAGTAATGGAAAAGAGCTCGCCGTGAAACATATATGGCAGTCGAGCTCCATCGACCAAACAAATTGTCAAACCAGTGCAACCATCTTAACCAAAAGGAAGATCAGGTCATCTGAATATGACGCAGAAGTAGCTACATTGAGTTCAGTGAGACATGTCAATGTAGTGAAATTATACTGTAGCATTTCGAGCGAGGATAGTAACCTGTTGGTTTATGAGTACTTACCGAATGGAAGTTTATGGGATCAGCTGCATACTAGCAGAAAGATTGAGATGGGATGGCAGATAAGGTACGAGGTTGCGGTTGGAGCAGCAAGAGGACTCGAATATTTGCATCATGGGTGCGACCAACCCGTGATTCACCGTGATGTGAAGTCGAGCAATATTTTATTAGACAGTGATTGGAAACCTAGGATAGCAGATTTCGGGTTAGCCAAGATTCTGCAAGATGCCTGTGGGGGTGGAGATTCTTCTCATGTCATAGCAGGAACACTCGGCTACATAGCCCCAGAATATGCATACACGTGCAAGATAAACGAGAAGAGCGACGTTTACAGCTTCGGAGTGGTCCTAATGGAACTAGTAACAGGAAGGAAGCCCAATGAGCCAGAGTTTGGGGAGAACAAAGACATTGTACAATGGGCACACAGCAGAATGAGAGACCTAAAAGGCAATCTGAAAGATATGGTAGATCCTAGCATCTCAGAGGTTCAAGTGGAAGATGCAATCAAAGTGTTACGAATCGCACTTCGCTGCACGGCTAAGACTCCGTCTACAAGGCCCTCCATGAGAATGGTAGTTCATATGCTTGAAGAAGCTGAACCTTGTAACTTTATTGACATTGTTGTCAAGAAAGAATGTGCAAAGTAA 2988 43.64 MSNSLNPPPLPAGKHSGRPPSLVGLRHFLLLLLLLLLFLCSLSLSHGDELQPLLDLKSALHNNSTSMALSSWVRGKDVCSSFHGIVCDSNGFVVEINLSAHNLSGILPFHSICSLQSLEKLSFGGNFLYGTVSNALRNCSMLKYLDLGQNFFTGEVPDLSSLERLRFLNLNNSGFSGDFPWKSLLNLTDLEFLSLGDNSFNPTTSFPSEIIELNKLYWLYLSNCSIHGEIPPGIGNLSLLENLELSQNELTGEIPSQIVNLRRLWQLELHENSLTGKLPIGFGNLTGLRKFDASTNNLEGDLMELRFLTNLESLQLFQNRFSGTIPEEFGDFKELVELSLYQNKLTGSLPQRIGSWAAFLFIDVSENFLSGPIPPDMCKQGSMTVLLMLQNNFSGGIPESYMNCKSLKRFRVSNNSLSGVVPAGIWSLPNLSIIDLSMNQFDGPVTSDIGKAKALAQLFLSNNRFSGRLPAELGEVSSLVSIQVDLNQFVGPIPESLGKLKVLDSLSLNNNKFSDNIPSSLGSCSSLSTIDLSMNSFSGHIPENLGYLPILNSLNLSNNELSGEIPTSFSQLKLSSFDLSNNRLSGQVPESLAIQAFEESFMRNPGLCSESIRYLSSCSSTSRPSSHIRSLLSCTIAGILVLLLMSFLCLLFVKSKRNNAKHLLKSRSWDMKPFHIVCFTEKEIIDSINSHNLIGKGGSGNVYKVVLSNGKELAVKHIWQSSSIDQTNCQTSATILTKRKIRSSEYDAEVATLSSVRHVNVVKLYCSISSEDSNLLVYEYLPNGSLWDQLHTSRKIEMGWQIRYEVAVGAARGLEYLHHGCDQPVIHRDVKSSNILLDSDWKPRIADFGLAKILQDACGGGDSSHVIAGTLGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGRKPNEPEFGENKDIVQWAHSRMRDLKGNLKDMVDPSISEVQVEDAIKVLRIALRCTAKTPSTRPSMRMVVHMLEEAEPCNFIDIVVKKECAK 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6163173 6166566 + CmoCh19G005270.1 Cmo19g00527 403687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00527 995 Gene3D Ribonuclease Inhibitor 307 379 IPR032675 -
Cmo19g00527 995 ProSiteProfiles Protein kinase domain profile. 688 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00527 995 SUPERFAMILY L domain-like 202 444 - -
Cmo19g00527 995 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 29 987 - -
Cmo19g00527 995 Gene3D Phosphorylase Kinase; domain 1 675 780 - -
Cmo19g00527 995 Gene3D Ribonuclease Inhibitor 47 203 IPR032675 -
Cmo19g00527 995 Gene3D Ribonuclease Inhibitor 380 491 IPR032675 -
Cmo19g00527 995 Gene3D Transferase(Phosphotransferase) domain 1 781 987 - -
Cmo19g00527 995 SUPERFAMILY Protein kinase-like (PK-like) 668 977 IPR011009 -
Cmo19g00527 995 Pfam Protein kinase domain 691 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00527 995 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 29 987 - -
Cmo19g00527 995 ProSitePatterns Protein kinases ATP-binding region signature. 694 716 IPR017441 GO:0005524
Cmo19g00527 995 SUPERFAMILY L domain-like 49 229 - -
Cmo19g00527 995 SMART LRR_typ_2 500 524 IPR003591 -
Cmo19g00527 995 SMART LRR_typ_2 237 261 IPR003591 -
Cmo19g00527 995 SMART LRR_typ_2 332 356 IPR003591 -
Cmo19g00527 995 SMART LRR_typ_2 308 331 IPR003591 -
Cmo19g00527 995 SMART LRR_typ_2 115 138 IPR003591 -
Cmo19g00527 995 SMART LRR_typ_2 548 572 IPR003591 -
Cmo19g00527 995 SMART LRR_typ_2 187 213 IPR003591 -
Cmo19g00527 995 Gene3D Ribonuclease Inhibitor 204 306 IPR032675 -
Cmo19g00527 995 SUPERFAMILY RNI-like 362 608 - -
Cmo19g00527 995 Gene3D Ribonuclease Inhibitor 492 618 IPR032675 -
Cmo19g00527 995 SMART serkin_6 688 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00527 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672|GO:0006468
Cmo19g00527 995 Pfam Leucine rich repeat N-terminal domain 47 88 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00184 Cmo-Chr12:1201778 Cmo19g00527 Cmo-Chr19:6163173 0 dispersed
Cmo13g00644 Cmo-Chr13:6856844 Cmo19g00527 Cmo-Chr19:6163173 0 dispersed
Cmo18g00374 Cmo-Chr18:2433680 Cmo19g00527 Cmo-Chr19:6163173 0 dispersed
Cmo19g00527 Cmo-Chr19:6163173 Cmo09g00599 Cmo-Chr9:2974990 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75101 PF00069 Pkinase 3.10E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00527 - - cmos:111455011 1922.52