Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00528 ATGGAGGAGACTCAAGCTGTGCTGTCCACCAGTGACGATTCAGGCGAAGATTTCTACGAGATGATTGAAGCGCCTAAGTTCGTTGACTTCACCGTTCCTGATCCCTACATTCCCGATGATCGCTACTGGTTCTGCTCACGAGTCGGGTGTGAAGAGAAGCATCCAGAAGAAATGGACTCTGATGTCGTTTACAAAAACTTTGTTATGCGGGTAATGGCAGCGAGGAGTCCGAATGTACGGCTTCAGAGAGGTCGAAGGAACCTGAAATGCCCACTTACAGCCCCTCCAAAGTCTTCGAGGCCTAGAGTGGCAAGGCTAGCTCTGATATCTTCCATTTCCAAAAGGATTGTGGACGCTAGAGTGAAATCTGGACCGCCTACTACCAAGCCTAGTACGACACAAGCTCATGCCAAAGCAATGACTACTCCAAGGAACAGGAAGCTTAACTCCAATACCAATTCTTTTCTGAGTGTTAAAAATTCCAAGACAACATCAGCTGAAGAGCCAAAGACTACAACGGTAGCTAAGGCTTTGGTCTTTCAATCTCCAAAGAGAGATAGGAAAAAGAAAAGTTCAAAAGAAATGAATACCCCTGTGAAAACTTTGTGTGCAGCAATGAAGAAACTTGAGATTACTAGTGGAAAGAAGAATGTATTAGGGGATGGACAGTCATTGCCCCAGGATGTTGTGAGGAAGAAGTTCAGAGGACGCGAGGTAAAGAGCCGGGTTCTTGATTCATTGGGAGTTCACGGTTGCAAATGCCAGGATGCCAAATCTGCAAGAGTTTTGAAGAGAAGCAAAGAAAAGAACCTAAAGCCGCCTCTTCCTGATCGTGTTGCCAAAGAAATTGTTGATGATGATGCCAGTAACATGGATATTGATGAGAAATCAAGGCATGTTTCAATACAAGGGTGCTCTATGTCAACTTCTGCTAAGAGTAATGAAGGAAATCAAGATGAACTTTTAAGATCTGAAGATTCAGATAGCTTTTCCGAAGACTCTAATGAAACTTCAATATCGAATTTTGATGAGAGAATTTCGGAAAAAGAGGTTGTTCTATGTGAAGTGGAGGATGATAAGAACCAAGAATACCATCGTGAAGAGATAGTCAAAACAGGTGCATTGGAGATGAATATTTCAGAACTTCTGGAGTGTGATGATAAAGAAAATGTAGCTGAAATGAATGAAGGTGATCGGGATGAAACGGTTTTGCAAATTGCAGAGATTCTAAACGAGAATACAGATAAAGTGTCCAAAAAATCTATAGATGATGATCCAGATGAGAAAATTTCAGAAGCAAATGATCTCAAATCTATTCTGTGCAAAGTGGAGCTTGAGAAGAATCAAGAATGCAATCATATAGAGCATGAAAGTGAAACCACCACAGATGAAAATGTCGCACCCAATGATAACAGGGAAAACAATTCTCACGGCCGATCTGAAAGAGTGGCATTTGGCAAACATGAGAAATTTAAAAATACAGCAAAGGTGGTCAAGGGAGTATCAAAGAACACTGTGAAAGAGAAATCTACCCCTGCCGTAGTTGGTTCTCATGGGCTGAAACCCAGCAGACCAAAGTCCACGAATCCCAAGCCATTCAGGCTCAGAACTGATGAAAGAGGGGTGCTAAGGGAAGCAAACTTGGGGAAGAAGCCTAATTGTCCCTTGAAAGACATCACTACATCTCGTAGGTTCCATGGGGACGACAAGTTGCAGAGAAAAAATAAATACACGAACCAAAATTCTGAATGTGAAAATGATGTTGAAGAAGAATATGAACAAAGGATATTAGAGAGCAAAGCCCCAGATGATCCACGAGGAGGAACAATACCAGATTCCTGCAACAACAAAAAAGTAGATTCTGAACATAAGTTATGTACAATGGATTCACAAAGTTGTGTTGCTTTAAAACGCAAGAAACAGAGTCGTTGTCGTCAGCTCGAACTAAGCAAAGAGAGAGCAACCAAGAAAACAGAGGAGAATTTGAAAAGGACTAAATTAGAAAGGATACAGCAAAGAGTTAGGAAGCCTAGAAGAAGGGTTGTATCAACTAAAGAAGAAATAACTTCTCTGGTACCATCTCGCCAACACAGTGCAAAGAAGGAAACCCCTCTGAAAATATTGAGTCACAAAGATGCTAAAAAACCATTAGATGCAATATCTCGAAAAAGAAGGCCTTCTCCAACTACTACTCCAAAGGAGCCAAATCTTCATAACAGTCATTTACCAACGAGAGTTGCTCAGGAAAATTGGCGTAGATGCTTCCTACTAATGAAGCAAAAGGCAGGAAAACAGGAAAAAGGAGAGGGCAAAAACCCTTTTTTCCCAGCCTACAGGGATCTAACCTCCAGTTTGCTAGCTTCTTGA 2367 41.57 MEETQAVLSTSDDSGEDFYEMIEAPKFVDFTVPDPYIPDDRYWFCSRVGCEEKHPEEMDSDVVYKNFVMRVMAARSPNVRLQRGRRNLKCPLTAPPKSSRPRVARLALISSISKRIVDARVKSGPPTTKPSTTQAHAKAMTTPRNRKLNSNTNSFLSVKNSKTTSAEEPKTTTVAKALVFQSPKRDRKKKSSKEMNTPVKTLCAAMKKLEITSGKKNVLGDGQSLPQDVVRKKFRGREVKSRVLDSLGVHGCKCQDAKSARVLKRSKEKNLKPPLPDRVAKEIVDDDASNMDIDEKSRHVSIQGCSMSTSAKSNEGNQDELLRSEDSDSFSEDSNETSISNFDERISEKEVVLCEVEDDKNQEYHREEIVKTGALEMNISELLECDDKENVAEMNEGDRDETVLQIAEILNENTDKVSKKSIDDDPDEKISEANDLKSILCKVELEKNQECNHIEHESETTTDENVAPNDNRENNSHGRSERVAFGKHEKFKNTAKVVKGVSKNTVKEKSTPAVVGSHGLKPSRPKSTNPKPFRLRTDERGVLREANLGKKPNCPLKDITTSRRFHGDDKLQRKNKYTNQNSECENDVEEEYEQRILESKAPDDPRGGTIPDSCNNKKVDSEHKLCTMDSQSCVALKRKKQSRCRQLELSKERATKKTEENLKRTKLERIQQRVRKPRRRVVSTKEEITSLVPSRQHSAKKETPLKILSHKDAKKPLDAISRKRRPSPTTTPKEPNLHNSHLPTRVAQENWRRCFLLMKQKAGKQEKGEGKNPFFPAYRDLTSSLLAS 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6166296 6171216 - CmoCh19G005280.1 Cmo19g00528 403688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00528 788 MobiDBLite consensus disorder prediction 598 618 - -
Cmo19g00528 788 PANTHER NEUROFILAMENT HEAVY PROTEIN 413 746 - -
Cmo19g00528 788 PANTHER NEUROFILAMENT HEAVY PROTEIN 11 420 - -
Cmo19g00528 788 MobiDBLite consensus disorder prediction 301 317 - -
Cmo19g00528 788 Coils Coil 637 657 - -
Cmo19g00528 788 MobiDBLite consensus disorder prediction 265 342 - -
Cmo19g00528 788 MobiDBLite consensus disorder prediction 125 152 - -
Cmo19g00528 788 MobiDBLite consensus disorder prediction 761 788 - -
Cmo19g00528 788 MobiDBLite consensus disorder prediction 510 534 - -
Cmo19g00528 788 MobiDBLite consensus disorder prediction 724 745 - -
Cmo19g00528 788 MobiDBLite consensus disorder prediction 699 722 - -
Cmo19g00528 788 Coils Coil 574 594 - -
Cmo19g00528 788 MobiDBLite consensus disorder prediction 474 491 - -
Cmo19g00528 788 MobiDBLite consensus disorder prediction 671 745 - -
Cmo19g00528 788 MobiDBLite consensus disorder prediction 265 299 - -
Cmo19g00528 788 MobiDBLite consensus disorder prediction 452 491 - -
Cmo19g00528 788 MobiDBLite consensus disorder prediction 121 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00528 - - - cmo:103495340 1010.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01438 Cmo19g00528 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01438 Cmo-Chr11:10119978 Cmo19g00528 Cmo-Chr19:6166296 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g820 . . . . . Bpe12g00727 . . Cmo19g00528 Cmo11g01438 . . . . Sed10g1931 Cpe04g00342 Cpe15g00411 Bhi05g00992 Tan02g1082 Cmetu01g1396 . Hepe02g0673 . . Cla02g00723 Cam02g0771 Cec02g0767 Cco02g0798 Clacu02g0765 Cmu02g0758 Cre02g1073 . . . Cone10ag1074 Lsi03g00640 Csa07g00652 . Cme01g00151 . . Bda15g00474 . . . . Bma08g00023 . . . Cma11g01685 Cma19g00515 Car11g01155 Car19g00390 . . . . . . . . . . . . . . . . . . Chy01g00160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008141 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35