Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00540 ATGGCTCTCATCAACCTCTCCCTTTCTCTCCTTTGTGTCTTGAGTACTTCTATCATGTTCCCCTCTATGGCTCAAGACATGTCTCAAGACTTTGTCGATGCCCATAACGCCGCTCGTGCACAAGTCGGTGTTGGACCCATCCAATGGGATGAAACTGTGGCAAACTATGCCCGACAATATGCCAACCAACGCGCCAACGATTGCCAGATGGTCCACTCTAATGGGCCTTATGGGGAAAATCTTGCAGGAAGCTCGGCTGACTTATCGTGCACTGACGCAGTTCAAATGTGGGTAAACGAAAAACAATTTTATGATTATAACTCCAACTCGTGCCTTGGCAACGAGTGTCGCCACTACACTCAAGTAGTGTGGAGTAAATCTGTTCGAATTGGATGTGCAAAAGTGAGATGCAACAGTGGTGGTACTTTCATCACCTGCAACTATGACCCGCCTGGCAATTACGAAGGTCAATGGCCATACTGA 483 47.62 MALINLSLSLLCVLSTSIMFPSMAQDMSQDFVDAHNAARAQVGVGPIQWDETVANYARQYANQRANDCQMVHSNGPYGENLAGSSADLSCTDAVQMWVNEKQFYDYNSNSCLGNECRHYTQVVWSKSVRIGCAKVRCNSGGTFITCNYDPPGNYEGQWPY 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6272186 6272668 - CmoCh19G005400.1 Cmo19g00540 403700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00540 160 CDD CAP_PR-1 28 160 - -
Cmo19g00540 160 SMART SCP_3 26 156 IPR014044 -
Cmo19g00540 160 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 19 160 IPR001283 -
Cmo19g00540 160 SUPERFAMILY PR-1-like 23 160 IPR035940 -
Cmo19g00540 160 Pfam Cysteine-rich secretory protein family 32 148 IPR014044 -
Cmo19g00540 160 Gene3D CAP 20 160 IPR035940 -
Cmo19g00540 160 PRINTS Allergen V5/Tpx-1 family signature 47 65 IPR001283 -
Cmo19g00540 160 PRINTS Allergen V5/Tpx-1 family signature 93 106 IPR001283 -
Cmo19g00540 160 PRINTS Allergen V5/Tpx-1 family signature 116 132 IPR001283 -
Cmo19g00540 160 PRINTS Allergen V5/Tpx-1 family signature 143 156 IPR001283 -
Cmo19g00540 160 ProSitePatterns CRISP family signature 1. 117 127 IPR018244 GO:0005576
Cmo19g00540 160 ProSitePatterns CRISP family signature 2. 143 154 IPR018244 GO:0005576
Cmo19g00540 160 PANTHER PATHOGENESIS-RELATED PROTEIN 1 19 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00540 K13449 PR1; pathogenesis-related protein 1 - csv:101211811 251.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01340 Cmo-Chr9:12153512 Cmo19g00540 Cmo-Chr19:6272186 2.20E-42 dispersed
Cmo19g00540 Cmo-Chr19:6272186 Cmo19g00542 Cmo-Chr19:6281534 9.97E-74 dispersed
Cmo19g00539 Cmo-Chr19:6268046 Cmo19g00540 Cmo-Chr19:6272186 1.35E-45 tandem
Cmo19g00540 Cmo-Chr19:6272186 Cmo19g00541 Cmo-Chr19:6275721 9.46E-62 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g802 . . Bda06g01145 . . . . . Cmo19g00540 . . . . . . Cpe04g00339 Cpe15g00419 . . . . . . . Cla02g00713 Cam02g0763 Cec02g0761 Cco02g0787 Clacu02g0754 Cmu02g0748 Cre02g1065 . . . . Lsi03g00627 Csa07g00657 . Cme01g00145 . . . . . . . . Sed07g1155 . . Cma11g01688 . . . . . Bhi11g01091 Tan01g0594 Cmetu07g1308 . . . . . . . . . . . Lsi03g00997 . Chy01g00154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00540 Cmo_Chr19 FPKM 1.513705 0.661903 3.104333 3.603841 4.147664 4.763922 4.213702 3.512927 4.556809 5.299809