Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00541 ATGATGACTATTCTTACACTCATTCTTCTTCTTTCGACCCTTTTAGTCAAATCATCAGATGCCCAGAATTCAGCTCAAGATTATATTAATAACCACAATTCAGCCAGATCATCTGTCGGCGTCGGAAATCTTGTATGGAACACAACTCTAGCTGCCTATGCTCAAACATACGCGAATTCGAGGAAAGGAGATTGCCAATTGGTGCATTCGAACGGGCCGTATGGCGAGAACCTTGCAAAGGGCAACAATGGATTCACTGGCACAGCTGCGGTGAAGCTATGGGTTGATGAAAAGCCTTACTATAGTTACAACACTAATGCATGTGCTGGAGGTGAGTGTCTTCATTACACGCAGGTTGTTTGGCAAAGCTCTTATCGTGTTGGGTGTGCGAGAGTTCAATGCAACAATGGCTGGTGGTTTGTGTCTTGCAATTATGATCCTCCAGGCAATTGGGATGGCGAGTGGCCTTATTAA 474 44.73 MMTILTLILLLSTLLVKSSDAQNSAQDYINNHNSARSSVGVGNLVWNTTLAAYAQTYANSRKGDCQLVHSNGPYGENLAKGNNGFTGTAAVKLWVDEKPYYSYNTNACAGGECLHYTQVVWQSSYRVGCARVQCNNGWWFVSCNYDPPGNWDGEWPY 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6275721 6276194 - CmoCh19G005410.1 Cmo19g00541 403701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00541 157 Pfam Cysteine-rich secretory protein family 30 145 IPR014044 -
Cmo19g00541 157 ProSitePatterns CRISP family signature 2. 140 151 IPR018244 GO:0005576
Cmo19g00541 157 SMART SCP_3 23 153 IPR014044 -
Cmo19g00541 157 CDD CAP_PR-1 25 157 - -
Cmo19g00541 157 PANTHER CAP (CYSTEINE-RICH SECRETORY PROTEINS, ANTIGEN 5, AND PATHOGENESIS-RELATED 1 PROTEIN) SUPERFAMILY PROTEIN 8 157 - -
Cmo19g00541 157 Gene3D CAP 22 157 IPR035940 -
Cmo19g00541 157 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 8 157 IPR001283 -
Cmo19g00541 157 SUPERFAMILY PR-1-like 2 157 IPR035940 -
Cmo19g00541 157 PRINTS Allergen V5/Tpx-1 family signature 44 62 IPR001283 -
Cmo19g00541 157 PRINTS Allergen V5/Tpx-1 family signature 90 103 IPR001283 -
Cmo19g00541 157 PRINTS Allergen V5/Tpx-1 family signature 113 129 IPR001283 -
Cmo19g00541 157 PRINTS Allergen V5/Tpx-1 family signature 140 153 IPR001283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00541 K13449 PR1; pathogenesis-related protein 1 - csv:101211573 283.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00541 Cmo-Chr19:6275721 Cmo04g00453 Cmo-Chr4:2255787 8.42E-61 dispersed
Cmo19g00540 Cmo-Chr19:6272186 Cmo19g00541 Cmo-Chr19:6275721 9.46E-62 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g799 Blo02g00914 . Bda06g01146 . Bpe07g00300 . . Bma12g00312 Cmo19g00541 . . . . . . . Cpe15g00420 . . . . . . . Cla02g00709 Cam02g0746 Cec02g0757 Cco02g0784 Clacu02g0752 Cmu02g0746 Cre02g1061 . Cone8ag1053 . . Lsi03g00626 Csa07g00658 . Cme01g00144 . . . . . Bpe05g00458 . . . . . Cma11g01690 Cma19g00532 . . . Cpe01g00380 . . . . . . . . . . . . . . . . Chy01g00153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00541 Cmo_Chr19 FPKM 5.357004 5.42687 8.044629 6.558215 13.13855 15.12231 12.310725 8.647367 7.802998 6.025542