Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00542 ATGGATCTTTTCAAGCTCTCCCTCTCCATCTTCTATGTCGTCTTGAGCTTTGCCATGTTTCGTTCCTCTCTAGCTCAAGACTCGCCTCAAGACTTTGTCAATGCCCACAATGCAGCTCGTGCCCAAGTTGGCGTTGGGCCAGTCCAGTGGGATGAAAGGGTAGCTAGTTTTGCTCGACAATATGCCAACCAACGCATCAATGATTGTCGATTGGTGCACTCAGGTGGACCATATGGAGAGAATATTGCATGGGGTAGCCCTGACTTGTCAGGGACTAATGCTGTTCGGATGTGGGTTGATGAGAAACAATTCTACAATCCTAGCGCTAATACTTGTGCAGCTGGCAGGGTGTGTGGTCATTACACTCAAGTGGTGTGGAGAAACTCGGTGAGAATTGGATGTGCTAAAGTGAGATGCACAAACAATCGTGGTACATTCATCATTTGCAATTATGATCCACGCGGCAATATCATAGGCCAAAGGCCATTCTAA 492 47.15 MDLFKLSLSIFYVVLSFAMFRSSLAQDSPQDFVNAHNAARAQVGVGPVQWDERVASFARQYANQRINDCRLVHSGGPYGENIAWGSPDLSGTNAVRMWVDEKQFYNPSANTCAAGRVCGHYTQVVWRNSVRIGCAKVRCTNNRGTFIICNYDPRGNIIGQRPF 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6281534 6282025 + CmoCh19G005420.1 Cmo19g00542 403702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00542 163 Pfam Cysteine-rich secretory protein family 33 151 IPR014044 -
Cmo19g00542 163 SMART SCP_3 27 159 IPR014044 -
Cmo19g00542 163 CDD CAP_PR-1 29 163 - -
Cmo19g00542 163 ProSitePatterns CRISP family signature 2. 146 157 IPR018244 GO:0005576
Cmo19g00542 163 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Cmo19g00542 163 PRINTS Allergen V5/Tpx-1 family signature 94 107 IPR001283 -
Cmo19g00542 163 PRINTS Allergen V5/Tpx-1 family signature 118 134 IPR001283 -
Cmo19g00542 163 PRINTS Allergen V5/Tpx-1 family signature 146 159 IPR001283 -
Cmo19g00542 163 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 19 163 IPR001283 -
Cmo19g00542 163 Gene3D CAP 22 163 IPR035940 -
Cmo19g00542 163 SUPERFAMILY PR-1-like 17 163 IPR035940 -
Cmo19g00542 163 ProSitePatterns CRISP family signature 1. 119 129 IPR018244 GO:0005576
Cmo19g00542 163 PANTHER PATHOGENESIS-RELATED PROTEIN 1 19 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00542 K13449 PR1; pathogenesis-related protein 1 - csv:101212539 270.011
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00568 Cmo-Chr2:3299500 Cmo19g00542 Cmo-Chr19:6281534 1.57E-36 dispersed
Cmo10g00958 Cmo-Chr10:4820296 Cmo19g00542 Cmo-Chr19:6281534 9.54E-77 dispersed
Cmo11g01430 Cmo-Chr11:10067116 Cmo19g00542 Cmo-Chr19:6281534 3.86E-87 dispersed
Cmo19g00540 Cmo-Chr19:6272186 Cmo19g00542 Cmo-Chr19:6281534 9.97E-74 dispersed
Cmo19g00542 Cmo-Chr19:6281534 Cmo19g00544 Cmo-Chr19:6289444 8.83E-90 dispersed
Cmo19g00542 Cmo-Chr19:6281534 Cmo19g00543 Cmo-Chr19:6286146 6.99E-96 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g795 . . Bda06g01147 . Bpe07g00299 . . Bma12g00311 Cmo19g00542 . . . . . . Cpe04g00337 Cpe15g00421 . . . . . . . Cla02g00708 Cam02g0744 Cec02g0756 Cco02g0783 Clacu02g0751 Cmu02g0745 Cre02g1060 Cone12ag1024 Cone8ag1057 . . Lsi03g00624 Csa07g00662 . Cme01g00141 . . . . . . . . . . . . Cma19g00533 . . . . . . . . . . . . . . . . . . . . Chy01g00152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00542 Cmo_Chr19 FPKM 8.302945 7.741223 8.13744 8.751341 11.992413 13.412575 13.673965 12.697149 14.224599 11.094753