Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00544 ATGCTTCCCTCATCTCTCGCTCAAGACTCGCCTCAAGACTTTGTTAATGGCCACAATGCAGCTCGTGCTCAAGTTGGTGTCGGGCCAGTTCGATGGGACGAAAGTGTAGCTAATTTTGCTCGACAATTTGCCAACCAACGCATCAATGATTGTCAACTGATGCACTCAGGCGGACCATTTGGAGAGAATATTGCAAAGCATAGCTCTGACATGTCAGGCACTGATGCAGTTCAGATGTGGGTCGATGAGAAGCCATTCTACAATCCTCGCACCAATACTTGTGCAGCTGGCAAGGTGTGTGGCCATTACACTCAAGTGGTTTGGAGAAACTCAGTGAGAATTGGATGTGCTAAAGTTAGATGCACAAACAATCGTGGTACATTCATCACTTGCAACTATGATCCACCAGGCAATATCTCAAGTGAAAGGCCATTCAGTACTGACCCGTTAATTAAAATTGCTAAATAA 468 45.3 MLPSSLAQDSPQDFVNGHNAARAQVGVGPVRWDESVANFARQFANQRINDCQLMHSGGPFGENIAKHSSDMSGTDAVQMWVDEKPFYNPRTNTCAAGKVCGHYTQVVWRNSVRIGCAKVRCTNNRGTFITCNYDPPGNISSERPFSTDPLIKIAK 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6289444 6289911 + CmoCh19G005440.1 Cmo19g00544 403704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00544 155 PANTHER PATHOGENESIS-RELATED PROTEIN 1 8 145 - -
Cmo19g00544 155 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 8 145 IPR001283 -
Cmo19g00544 155 CDD CAP_PR-1 11 145 - -
Cmo19g00544 155 ProSitePatterns CRISP family signature 2. 128 139 IPR018244 GO:0005576
Cmo19g00544 155 Pfam Cysteine-rich secretory protein family 16 133 IPR014044 -
Cmo19g00544 155 ProSitePatterns CRISP family signature 1. 101 111 IPR018244 GO:0005576
Cmo19g00544 155 SMART SCP_3 9 141 IPR014044 -
Cmo19g00544 155 Gene3D CAP 9 145 IPR035940 -
Cmo19g00544 155 PRINTS Allergen V5/Tpx-1 family signature 30 48 IPR001283 -
Cmo19g00544 155 PRINTS Allergen V5/Tpx-1 family signature 100 116 IPR001283 -
Cmo19g00544 155 PRINTS Allergen V5/Tpx-1 family signature 76 89 IPR001283 -
Cmo19g00544 155 PRINTS Allergen V5/Tpx-1 family signature 128 141 IPR001283 -
Cmo19g00544 155 SUPERFAMILY PR-1-like 7 145 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00544 K13449 PR1; pathogenesis-related protein 1 - csv:101212539 238.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01430 Cmo19g00544 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00542 Cmo-Chr19:6281534 Cmo19g00544 Cmo-Chr19:6289444 8.83E-90 dispersed
Cmo19g00544 Cmo-Chr19:6289444 Cmo19g00548 Cmo-Chr19:6318294 1.44E-87 dispersed
Cmo19g00543 Cmo-Chr19:6286146 Cmo19g00544 Cmo-Chr19:6289444 6.60E-94 tandem
Cmo19g00544 Cmo-Chr19:6289444 Cmo19g00545 Cmo-Chr19:6296851 4.56E-86 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g790 . Blo03g00054 Bda06g01150 . . . Bma05g00637 . Cmo19g00544 Cmo11g01430 . . . . Sed10g1935 . . Bhi05g01000 Tan02g1067 Cmetu01g2331 Lac12g0135 . . . Cla02g00703 Cam02g0736 Cec02g0750 Cco02g0776 Clacu02g0746 Cmu02g0741 Cre02g1054 . . . . Lsi03g00608 Csa07g00665 . Cme01g00137 . . . . . . . . . . . . Cma19g00535 . . . . . . . . . . . . . . . . . . . . Chy01g00149 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00544 Cmo_Chr19 FPKM 124.039421 133.812469 3.538691 3.73989 10.240233 8.948735 7.413925 1.727841 2.156297 1.535063