Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo19g00556 | ATGCGAGGACAGCATTTTCACCCACAGAAGCCGGGTCTCGCCCGACCCGATGAGGAAAACGAACCAGTTCGCTCGTATCTCCCTGGAGTGAACGTCCCATTAGGCGCCGGAATTCGGAAGAAGGGAACCGGAGTCCGGCCATGGCTGCTCCTGGACTCGACCGGCGAAGCTCAAGTAGTTGAGGCTGGAAAACATGCGATTATGCGGCGGACTGGCCTGCCGGCTCGGGACCTTCGGATTCTCGATCCGTTGCTCTCGTATCCATCTACGATTCTTGGCCGTGAGAAAGCGATTGTGATCAATTTAGAGCACATCAAAGCCATTATCGCTGCTCAAGAAGTGTTCGTGTTGAATGCCAGGGATCCGTCTGTAACTCCCTTTGTTGAGGAGCTTCAGAAGCGAGTATTGCGGCACCATCAAGCCACGAAGGCCGCTCAGCTTTCTGTTTGGATTGTAGAACTTATTGACAATATGCTGTCCAGTTATTTGCTAAGTGATGGCAATGGCGATGATTCTGATTGGAGAAATCTGTATGACCTGGGGGAGCCTCGATCGAGGACTCAAAGTCCTAATTACTACCAAGGATTTCCACAGGCTGACGAGGAGGAGGGGAAGGAACACGAGAAACAAGGTCTCGAAAATCGGGAGGGATTGAAGGTTCTTCCTTTCGAGTTTGTTGCTTTGGAGGCATGCCTTGAAGCTGCTTGCAGTTGCTTAGAAAATACATTGGAGCTAGAAGCTCACCCAGCTTTGGATAAGCTGACTACTAAGATTAGTAATCTCAATTTGGAACGGGTGCGTCAAATCAAAAGTCGATTGGTTGCAATAACTGGACGAGTTCAAATGGTGTCTAGATTTAATTACTACTCACGACGCATTTTATTGGGAAACAGATGCACTCTTTTTATTCTTTTCGAACGCTACGGTTGTTTACAGGTGCGCGACGAATTAGAACACTTGCTAGATGATGATGAGGATATGGCTGAGATGTACTTAACAGAGAAGATGGTTCAGCAACAACTTGAGAACTCTTCCACTTCTTCAATTCCCGAGAGAGATGAAATGGACGACGCAGTTCAGCAGTCAGGCAACAACGAGAGGCACGAGACTCATCTTATTTCTCCTCCTGAAATATCGTTGGAAGGCAATATGGATGCTTCCCATGTGGGCAGGGACAGCCATGGGACCCGGACGAGTACTACGCAGAGTGCTATAGGCAAACACCTCGACGTGGAGGAACTCGAGATGCTGTTGGAGGCATACTTTGTGCAAATTGATGGTACACTCAACAAACTCTCCACGGTATGCAAAATCATCAATGTTTTCTATCATCTGAGGGAGTATGTGGATCACACAGAAGATTACATCAACATAATGCTGGATGATAAACAAAACCATCTTCTACAAATGGGAGTAATGTTGACAACGGCAACCCTTGTCGTGAGCGCGTTCATCGTGGTGGCAGGTATCTTCGAGATGAACATCCATATTGAACTGTTTGAACCCGAGAAAGCAGGCATGCCCGAGTTCCTGTGGACTGTTGGTGGTGGCACTACTGGAACCATCTTGTTGTATGTCGTTGCTATCGCTTGGTGCAAGCACAAACGCTTGCTCGAGTAG | 1620 | 47.9 | MRGQHFHPQKPGLARPDEENEPVRSYLPGVNVPLGAGIRKKGTGVRPWLLLDSTGEAQVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTILGREKAIVINLEHIKAIIAAQEVFVLNARDPSVTPFVEELQKRVLRHHQATKAAQLSVWIVELIDNMLSSYLLSDGNGDDSDWRNLYDLGEPRSRTQSPNYYQGFPQADEEEGKEHEKQGLENREGLKVLPFEFVALEACLEAACSCLENTLELEAHPALDKLTTKISNLNLERVRQIKSRLVAITGRVQMVSRFNYYSRRILLGNRCTLFILFERYGCLQVRDELEHLLDDDEDMAEMYLTEKMVQQQLENSSTSSIPERDEMDDAVQQSGNNERHETHLISPPEISLEGNMDASHVGRDSHGTRTSTTQSAIGKHLDVEELEMLLEAYFVQIDGTLNKLSTVCKIINVFYHLREYVDHTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFIVVAGIFEMNIHIELFEPEKAGMPEFLWTVGGGTTGTILLYVVAIAWCKHKRLLE | 539 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 6400264 | 6404335 | + | CmoCh19G005560.1 | Cmo19g00556 | 403716 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo19g00556 | 539 | MobiDBLite | consensus disorder prediction | 175 | 211 | - | - | |
| Cmo19g00556 | 539 | Gene3D | Magnesium transport protein CorA, transmembrane region | 307 | 467 | - | - | |
| Cmo19g00556 | 539 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cmo19g00556 | 539 | Gene3D | - | 37 | 119 | - | - | |
| Cmo19g00556 | 539 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 312 | 539 | IPR039204 | - | |
| Cmo19g00556 | 539 | CDD | Mrs2_Mfm1p-like | 48 | 537 | IPR039204 | - | |
| Cmo19g00556 | 539 | Gene3D | Magnesium transport protein CorA, transmembrane region | 198 | 286 | - | - | |
| Cmo19g00556 | 539 | PANTHER | MAGNESIUM TRANSPORTER MRS2-D-RELATED | 22 | 283 | - | - | |
| Cmo19g00556 | 539 | PANTHER | MAGNESIUM TRANSPORTER MRS2-D-RELATED | 312 | 539 | - | - | |
| Cmo19g00556 | 539 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 22 | 283 | IPR039204 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo11g01427 | Cmo19g00556 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo17g00183 | Cmo-Chr17:1083418 | Cmo19g00556 | Cmo-Chr19:6400264 | 2.46E-86 | dispersed | |
| Cmo19g00556 | Cmo-Chr19:6400264 | Cmo16g00423 | Cmo-Chr16:1976093 | 2.85E-65 | dispersed | |
| Cmo11g01427 | Cmo-Chr11:10049721 | Cmo19g00556 | Cmo-Chr19:6400264 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo19g00556 | - | - | csv:101213978 | 739.569 |