Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00561 ATGGCCTGTGACAAGACGGTTTATCTTGTTGATAAGCTAACTGCTGATAATAGGATCTTCCATAAGCCTTGCTTCAGATGCTACCATTGTAAAGGCACCCTCAAGCTTAGCAACTATTGTTCCTTTGAGGGAGTGCTGTATTGCAGGCCTCACTATGATCAACTCTTCAAGAGGACTGGCAGCCTTGACAAGAGCTTTGAAGGAACTCCAAAAATCACGAAACCCGAAAAGCCCACTGAAAACGAGAATGCAAAGTCAGTCTCCTCCATGTTTGGTGGCACTAGAGATAAATGTGCAGGCTGCATCAAGACTGTTTATCCCATTGAAAAGGTAACGGTGAACGGGACGGCGTACCACAAGAGCTGCTTCAAATGTAGCCATGGTGGGTGCACAATAAGCCCATCAAACTACATAGCACATGAGGGGAAGCTGTACTGCAAGCACCATCACATTCAACTGTTCAAGGAGAAGGGAAACTACAGCCAGCTTGAAACTGAGCGCCAAAAGGAGAATTCAGTGCCAATCAATACTCTAAATGCTAATAATCCAATGGAGATTGCAGCTGAATCTTAG 573 45.03 MACDKTVYLVDKLTADNRIFHKPCFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKITKPEKPTENENAKSVSSMFGGTRDKCAGCIKTVYPIEKVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKENSVPINTLNANNPMEIAAES 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6430332 6433225 - CmoCh19G005610.1 Cmo19g00561 403721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00561 190 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 173 - -
Cmo19g00561 190 PANTHER OS06G0237300 PROTEIN 1 173 IPR045268 GO:0051015
Cmo19g00561 190 Pfam LIM domain 98 153 IPR001781 -
Cmo19g00561 190 Pfam LIM domain 2 54 IPR001781 -
Cmo19g00561 190 ProSiteProfiles LIM domain profile. 96 156 IPR001781 -
Cmo19g00561 190 Gene3D Cysteine Rich Protein 1 64 - -
Cmo19g00561 190 Gene3D Cysteine Rich Protein 93 162 - -
Cmo19g00561 190 MobiDBLite consensus disorder prediction 67 88 - -
Cmo19g00561 190 ProSiteProfiles LIM domain profile. 1 58 IPR001781 -
Cmo19g00561 190 SMART lim_4 97 149 IPR001781 -
Cmo19g00561 190 SMART lim_4 2 51 IPR001781 -
Cmo19g00561 190 CDD LIM2_SF3 98 158 - -
Cmo19g00561 190 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 124 163 - -
Cmo19g00561 190 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 25 - -
Cmo19g00561 190 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 26 66 - -
Cmo19g00561 190 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 90 123 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00561 K09377 CSRP; cysteine and glycine-rich protein - csv:101214700 357.451
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01422 Cmo19g00561 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01840 Cmo-Chr1:13432555 Cmo19g00561 Cmo-Chr19:6430332 1.15E-15 dispersed
Cmo05g00138 Cmo-Chr5:601874 Cmo19g00561 Cmo-Chr19:6430332 8.70E-10 dispersed
Cmo09g00287 Cmo-Chr9:1269812 Cmo19g00561 Cmo-Chr19:6430332 1.93E-13 dispersed
Cmo19g00561 Cmo-Chr19:6430332 Cmo04g03043 Cmo-Chr4:21322807 3.63E-22 dispersed
Cmo11g01422 Cmo-Chr11:10025478 Cmo19g00561 Cmo-Chr19:6430332 6.20E-16 wgd
Cmo12g00541 Cmo-Chr12:3299159 Cmo19g00561 Cmo-Chr19:6430332 3.35E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g720 . . . . . . . . Cmo19g00561 Cmo11g01422 . . . . Sed10g1170 Cpe04g00329 Cpe15g00434 Bhi05g01027 Tan02g1724 Cmetu03g1320 Lac12g0158 . . . Cla02g00689 Cam02g0721 Cec02g0735 Cco02g0757 Clacu02g0733 Cmu02g0729 Cre02g1040 . . . . Lsi03g00583 Csa07g00679 . Cme01g00126 . . . . . . . . . . . Cma11g01697 Cma19g00547 Car11g01146 Car19g00404 . . . . . . . . . . . . . . . . . . Chy01g00135 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000380 2 4 3 3 2 4 8 4 4 3 3 4 8 4 4 7 4 3 8 4 4 4 4 4 4 3 4 8 4 3 128
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11623 PF00412 LIM 1.50E-12 CL0167 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00561 Cmo_Chr19 FPKM 3.714985 4.611252 4.719687 4.400921 1.796456 1.84399 2.242371 10.208662 10.344831 12.407336