Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00564 ATGGAAAGAAAGCAGATTGACGGCGATCGTCCGTGGCAGTCTTACAACACTGTCTACACCAATGCAAAAGCCGGTATGGAAGGTGTTGACAAGGAGAAAGTACAAAGAATTGTCTATGAAATGAGTAAAGGGTCGAAATATTTTGAAAATGAGGAGCGGAAAGAGGCCATCATCAGAGAAAAGATTGAGAAGATGCGAGCTAGATGTATGCAGCTTACTGCAACGGATCTTTCTCAGTATCAAAAGGTTGCAGATAAAAGAATTTTGGAGCTGGAAGGTACACGTGACCTGTCAAGGATATGGTTGCATGTAGATATGGATGCTTTCTATGCCGCTGTTGAAACTTTAAGCAATCCTTTATTAGAGGGCAAGCCAATGGCTGTTGGTAGCATGTCGATGATTTCTACTGCTAACTATGAGGCTCGAAAATATGGAGTTCGTGCTGCTATGCCTGGTTTTATTGCACGTAGATTATGTCCAGAGTTAATTTTTGTTCCCACAGATTTCAAGAAGTATAATTATTACAGTGATTTAGCTAGAAAAGTATTCCGTAGGTATGACCCCAACTTCTTGGCTGCTAGTCTGGATGAAGCATACCTCGATATAACTGAAGTCTGCAAAGATAGAGGCCTTACTAGTGAACAAATTGCTATGGATCTCAGAACCAGTATTTATGAAGAAACTGGTCTTACGTGTAGTGCAGGGGTTGCTGCCAACCGGCTACTTGCCAAGGTCTGCTCTGATATTAACAAACCAAATGGACAGTTCATTTTGCCAAATGACCGAAGAGCTATTGTAACATTCGTATCATCACTACCCATAAGAAAGATTGGTGGCATCGGAAAGGTCACTGAACATATCTTAAAGGACGGTTTGGGGATTAATACATGTGAGGAGATGCTACAGAAGGGTGGTCACCTCTGTGCGTTGTTTTCTATATCCTCAGCAGATTTTTTCTTGTCGGTTGGGCTTGGCCTCGGGAGCACCGATACTCCACAGGTGAGATTGCGTAAGAGCATCAGTAACGAAAGAACGTTTGCAGCCACTGCTGAAGAAAAATTAATTTTCCAGAAACTTGCTGACCTTGCAGAGATGCTGTCTATGGACATGGAAAAAGAAGGTCTGAGCGGGCGAACACTGACGCTTAAACTAAAAACTGCATCCTTTGAGGTTAGAACCAGAGCTGTAACTTTGCAACAATACATTTGTTCTAGCAGTGACATCTTGCAACATGCATCAAAGCTGCTAAAGGCTGAACTGCCCATTTCTTTGAGACTAATCGGGTTGCGGATATCTCACTTCAATGAAGATGGAGCCATTGCTGGGTCTGATCCAGCTCAAACACCTATTACTCGATTTATTACATCAGGAGATGCTACTAGAAAGAATATGGGTGATTGTTGCACCTCAAGTCCTGATCCTAATGTTCATAGCTTCATGGATGAATCTGAAATTGATGTATTTATCAATGGCACTGAAACACACCATCAAGATAGTAGTCATCCAAGAGTTGGCAATAATCTCTCGAATATGGATGACCGAAACTGTACGTCCAGCAATGACGTTGAGAAGTCGGAGAAATTTAAGAATCTTTCGAGCAACGTCAGTACTGATCAGGTGGACAATTTGAATGGCTTTGTCCCTCGAGTATCGGGCACAGCATGTGCTTCTTCCCCTAGAAACCTCGAAGGCAATCAGAATAATAATGTCGAAGCCAGAACTAACGTCGAGGCAAGATCACCAGATAATAATGGACAGAATTTGTGGATCGATGACTACAAATGTGCAATCTGTGGTGCCGAAGTACCAGAGAGTTTCATTGATGAAAGACAAGAGCACATGGATTTTCACATTGCGGAAAAACTCCAGGAAGAGGAATCTGGCATTCGTTCAAGAACCCTTACGCCAATCCGAAGGACTCCTGACAAGAACCAACTGGCAAGTCAAAGAAAGCAGAAAAGGCAAAAGTCAACTCCAAAGAAAGAGGTCAAACACATTCCAATTGACTTATTCTTTGTGAAGAATAATCAGAAGTTTTAG 2040 42.21 MERKQIDGDRPWQSYNTVYTNAKAGMEGVDKEKVQRIVYEMSKGSKYFENEERKEAIIREKIEKMRARCMQLTATDLSQYQKVADKRILELEGTRDLSRIWLHVDMDAFYAAVETLSNPLLEGKPMAVGSMSMISTANYEARKYGVRAAMPGFIARRLCPELIFVPTDFKKYNYYSDLARKVFRRYDPNFLAASLDEAYLDITEVCKDRGLTSEQIAMDLRTSIYEETGLTCSAGVAANRLLAKVCSDINKPNGQFILPNDRRAIVTFVSSLPIRKIGGIGKVTEHILKDGLGINTCEEMLQKGGHLCALFSISSADFFLSVGLGLGSTDTPQVRLRKSISNERTFAATAEEKLIFQKLADLAEMLSMDMEKEGLSGRTLTLKLKTASFEVRTRAVTLQQYICSSSDILQHASKLLKAELPISLRLIGLRISHFNEDGAIAGSDPAQTPITRFITSGDATRKNMGDCCTSSPDPNVHSFMDESEIDVFINGTETHHQDSSHPRVGNNLSNMDDRNCTSSNDVEKSEKFKNLSSNVSTDQVDNLNGFVPRVSGTACASSPRNLEGNQNNNVEARTNVEARSPDNNGQNLWIDDYKCAICGAEVPESFIDERQEHMDFHIAEKLQEEESGIRSRTLTPIRRTPDKNQLASQRKQKRQKSTPKKEVKHIPIDLFFVKNNQKF 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6459063 6469214 + CmoCh19G005640.1 Cmo19g00564 403724

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00564 679 PIRSF DNA_pol_eta 94 215 - -
Cmo19g00564 679 PIRSF DNA_pol_eta 211 347 - -
Cmo19g00564 679 PIRSF DNA_pol_eta 458 676 - -
Cmo19g00564 679 PANTHER DNA POLYMERASE KAPPA 7 653 - -
Cmo19g00564 679 MobiDBLite consensus disorder prediction 494 520 - -
Cmo19g00564 679 Pfam Ubiquitin-Binding Zinc Finger 591 625 IPR041298 -
Cmo19g00564 679 Coils Coil 48 68 - -
Cmo19g00564 679 Gene3D - 106 256 IPR043128 -
Cmo19g00564 679 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 335 432 IPR036775 GO:0003684|GO:0006281
Cmo19g00564 679 MobiDBLite consensus disorder prediction 555 585 - -
Cmo19g00564 679 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 7 653 - -
Cmo19g00564 679 Pfam impB/mucB/samB family 104 248 IPR001126 GO:0006281
Cmo19g00564 679 Gene3D - 19 105 - -
Cmo19g00564 679 Gene3D - 118 166 - -
Cmo19g00564 679 Gene3D - 335 439 IPR036775 GO:0003684|GO:0006281
Cmo19g00564 679 ProSiteProfiles UmuC domain profile. 101 281 IPR001126 GO:0006281
Cmo19g00564 679 CDD PolY_Pol_IV_kappa 102 434 IPR022880 GO:0003887
Cmo19g00564 679 Pfam impB/mucB/samB family C-terminal domain 337 438 IPR017961 GO:0003684|GO:0006281
Cmo19g00564 679 SUPERFAMILY DNA/RNA polymerases 75 329 IPR043502 -
Cmo19g00564 679 Gene3D - 257 330 - -
Cmo19g00564 679 ProSiteProfiles Zinc finger UBZ3-type profile. 588 625 IPR041298 -
Cmo19g00564 679 MobiDBLite consensus disorder prediction 623 662 - -
Cmo19g00564 679 MobiDBLite consensus disorder prediction 501 516 - -
Cmo19g00564 679 Hamap DNA polymerase IV [dinB]. 98 450 IPR022880 GO:0003887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00564 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7] - csv:101212452 1094.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00564 Cmo-Chr19:6459063 Cmo19g00586 Cmo-Chr19:6605185 6.58E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g708 . . . . . . . . Cmo19g00564 . . . . . . . Cpe15g00437 . . . . . . . Cla02g00683 Cam02g0717 Cec02g0730 Cco02g0752 Clacu02g0726 Cmu02g0724 Cre02g1036 Cone12ag1043 Cone8ag1076 . . Lsi03g00577 Csa07g00682 . Cme01g00122 . . . . . . . . . . . . Cma19g00550 . Car19g00408 . . . . . . . . . . . . . . . . . . Chy01g00132 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011596 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00564 Cmo_Chr19 FPKM 12.926388 11.134125 19.435507 21.44875 107.499069 95.668747 105.584267 28.332714 29.221445 29.759443