Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo19g00580 | ATGGTTAATGGCAAATCTTATGCTATGCGCTCTTCGTGTATAAATCTTGAGTTCATCAATCTCTCCGACCTCCTCCAAGGCCGGATTAACAGTTCCCGCCTCCGTCAAATTCACGGCCGCGTCTTTCGTCTGCTGAAGCATCAGGACAATCTAATCGCAACTCGACTTATCGGCCACTACCCATATTCTGTTGGAATCAGAGTCTTCAATCAACTCCTACGGCCGAACATATTTCCTTGCAACGCGATTATCAGAGTACTTGCTGAATCGAATTGTTCGTTTCTTGCCTTTTCCATCTTCAAATCTTTGAAGCGGCTTTCACTTTCCCCTAATGATTTCACTTTTTCTTTCCTTCTCAAGGCGTTTCACCGTTCCAGCCATTCTCCTAATGTGAAACAAGTTCATACTCATGTCATGAAAATGGGTTATTTGGGTGATTCTTTTATCTCCAATGCTCTTCTTGGAGTCTACGCGAGAGGTTTGAAGGATATGGGTTCTGCACATAACATGTTCGACGAAATGTCTGAGAGAGAAATGGCTTGTTGTTGGACTTCTTTGATTGCTGGCTATGCTCATATGGGTCTTGCTGAAAAGGCTCTGCTGCTTTTTGTGATGATGATCAAAGAGAATATCCAGCCCGAGGATGACACCATGGTTAGTGTTCTATCTGCTTGTTCTAAGCTTCAAATTGCTGAAATTGAAAAATGGGTTGCAGAATTAACACAATTGGTTAATGAATTTGATTCCTGTTGTGATTCAATCAATATTGTTCTTGTTTATCTATATGGGAAGTGGGGGAAGATTGAAAAGAGTGAAGAAAAGTTCAATGAAATTGTTGATAAGAGAAGTGCTATTGTCTGGAATTCAATGATAAATGCATATTTTCAAAACGGTTGCCCTGTGGAGGCCTTGACCCTTTTCCGTCTAATGCTTGAGAATCCCCATTGCAAACCCAACCATGTCACAATGGTTACCGTCCTTTCGGCTTGCGCTCAAATTGGAGATTTGCAGCTCGGTCGTCGGGTTCATGAAGCTCTCGAACACGGCGGGCGCAGAGGTATCATTGCATCAAACAAAATGTTGGCCACTGCATTGATTGATATGTATTGTAAAAGTGGGAGTTTGGAGAAGGCAAAACAAGTTTTTCATGAACTAATCTGCAAAGATGTAATCTCCTTCAATGCCATGATCATGGGCCTTGCAGTAAACGGCAAAGCCGATGAGGCATTGAAGCTTTTCTCCCAAATGCAAGAGTCTGATATAAAACCAACCACTGGAACATTCATTGGCTTACTATCTGCTTGTAGCCATTCGGGGTTTCTCGAACAAGGACGTCAAATTTTCATTCAAATGGCTACCCGCTACTCAACGTCGCCTAGTCTAGACCACTATGCTTGTTACATTGATCTCCTTGCTCGAGCGGGCTGCGTCGAGGACGCTCTTGAAGTTGTTTCAACCATGCCTTTTGAACCTAATAACTTTGTTTGGAGTTCTCTGCTGAGAGGCTGCCTGCTTCATTCGAGATTCGAGTTGGCACGATATGTTTCGAAAAAGCTTGTTGAAGTAGATCCCGAAAGCTCTGCTGGGTATGTAATGCAGGCGAATTCATTTGCCACTGATCTTCAATGGGATGATGTCTCGGCTTTGAGATGGTTTATGAGAGAAAAGGGTGTTCATAAGCAGCCAGGGCGGAGTTGGATCAGTATAGATGGGACTGTGCATGAATTCTTCTCGGCAACCAAATCACATCCTTGTGTGGATCTGTTATACAGAGATTCTGGGCCCGCGGGTCCTGGACCCTCCGCCGACGGCATCGGCGGGCTCGAAACTGGGGCCGGACCCGGAGCCGCCTTCAACTTCTTCTTACTGGGTGCAGGAGCCGGAACCGCCGCTGGTGGTGATGCCAGTGGTGCAGGAGGTGGAGTGGCTGGTGGTGGGGTTGCAGGTGGTGGGGTTGCCGGTGGTGGGGATGCTGGAGGAGGAGTGGCCGGCGGTGGGGATGCCGGAGGAGGAGTGGCTGGTGGTGGGGAAGCTGGAGGTGGGGAAGCTGGAGGAGGGGTGGCCGGTGGTGGGGATGCCGGAGGAGGAGTGGCTGGAGGTGGGGAAGCCGGAGGGGGAGTGGCAGGAGGAGTGGCAGGTGGGGGAGCTGATACTGGAGGAGGAGTGGCGGGAGGAGGGGCGGTGGTGATTCTCCTCCCCACCTCCGTTTGCCTTCTCCGACTAACTCTACAACTTTTTCTCGTCGTTTCTCCGCCTCTCGTAATCGGATTCTTTCCGTCTCCCATGGACCCGCCGGAGTGCCAGAAGCCTTCCGTCCGAACGTCGAAGAAGCGCAACTCGGAGGAAGACTTGCAACTGGCCACTGCCAACAAGAGAGCCGTGCTTGACGAGATCACCAACTCGTTGATCTTCAGTTCGAATCAGTGCTCTCTTTCTGATCAGGAGATGACGGATAAGCATCTGGACGAGGAGAAACTTCCTGAAGGAAGGTCTGTTGATTGTTCTAAGAAGTCTGGCTCTGCTTCTAGCATTTATAACCAACTCCGATTAATGGAGATGGAATTACACATGAAGGTACTGCCAAACATTGGAAAGGCTCACAACGGTCACTCCAGTGTAACGTTCCCTCGTTTCCGAGAAATTCTAGTCGATTGGTTAATAGACGTTGCTGAGGAATACAAGCTTGTATCAGACACCCTATATCTCACTGTATCACACATTGACAGATACTTATCCTGGCATGCTGTTGACAGAAACAAGCTACAACTTCTTGGTGTTTGTTGCATGCTAATTGCATCGAAGTATGAAGAGATCAATCCTCCTCACGTTGAAGACTTCTGCTATATAACTGATAATGCGTATACCATTGAACAGGCTCCAGACTTGGAATTTGAGTTCTTGAGTAGTTATCTTGCGGAGCTAAGTTTGTTAGACCACCGTTTTGTTCAATTCTTACCTTCAAAGATCGCTGCATCAGCCATTTTTCTTTCGAGAATGACAATCAAACCACAGAACCATCCTTGGTGTTTAGCACTACAACATTGCTCCGGTTACAGGCCATCTCAATTGAAGGAATGCATTCTTGCCATTCATGACTTGCAATTAAATAGAAAAAAAAGCTCTTTACTAGCTTTAAGAGACAAGTACAAGCAGCATAAGTTCATGTGTGTGGCAGAGCTATCGTCTCCCCCAGAAATTCCTGCACATTATTTCGAGGACATTGATCAGCAATCATTCAACAGGTTCTTAAGAACATAA | 3258 | 46.81 | MVNGKSYAMRSSCINLEFINLSDLLQGRINSSRLRQIHGRVFRLLKHQDNLIATRLIGHYPYSVGIRVFNQLLRPNIFPCNAIIRVLAESNCSFLAFSIFKSLKRLSLSPNDFTFSFLLKAFHRSSHSPNVKQVHTHVMKMGYLGDSFISNALLGVYARGLKDMGSAHNMFDEMSEREMACCWTSLIAGYAHMGLAEKALLLFVMMIKENIQPEDDTMVSVLSACSKLQIAEIEKWVAELTQLVNEFDSCCDSINIVLVYLYGKWGKIEKSEEKFNEIVDKRSAIVWNSMINAYFQNGCPVEALTLFRLMLENPHCKPNHVTMVTVLSACAQIGDLQLGRRVHEALEHGGRRGIIASNKMLATALIDMYCKSGSLEKAKQVFHELICKDVISFNAMIMGLAVNGKADEALKLFSQMQESDIKPTTGTFIGLLSACSHSGFLEQGRQIFIQMATRYSTSPSLDHYACYIDLLARAGCVEDALEVVSTMPFEPNNFVWSSLLRGCLLHSRFELARYVSKKLVEVDPESSAGYVMQANSFATDLQWDDVSALRWFMREKGVHKQPGRSWISIDGTVHEFFSATKSHPCVDLLYRDSGPAGPGPSADGIGGLETGAGPGAAFNFFLLGAGAGTAAGGDASGAGGGVAGGGVAGGGVAGGGDAGGGVAGGGDAGGGVAGGGEAGGGEAGGGVAGGGDAGGGVAGGGEAGGGVAGGVAGGGADTGGGVAGGGAVVILLPTSVCLLRLTLQLFLVVSPPLVIGFFPSPMDPPECQKPSVRTSKKRNSEEDLQLATANKRAVLDEITNSLIFSSNQCSLSDQEMTDKHLDEEKLPEGRSVDCSKKSGSASSIYNQLRLMEMELHMKVLPNIGKAHNGHSSVTFPRFREILVDWLIDVAEEYKLVSDTLYLTVSHIDRYLSWHAVDRNKLQLLGVCCMLIASKYEEINPPHVEDFCYITDNAYTIEQAPDLEFEFLSSYLAELSLLDHRFVQFLPSKIAASAIFLSRMTIKPQNHPWCLALQHCSGYRPSQLKECILAIHDLQLNRKKSSLLALRDKYKQHKFMCVAELSSPPEIPAHYFEDIDQQSFNRFLRT | 1085 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 6571314 | 6583578 | + | CmoCh19G005800.1 | Cmo19g00580 | 403740 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo19g00580 | 1085 | Gene3D | Tetratricopeptide repeat domain | 350 | 586 | IPR011990 | GO:0005515 | |
| Cmo19g00580 | 1085 | Gene3D | Tetratricopeptide repeat domain | 52 | 251 | IPR011990 | GO:0005515 | |
| Cmo19g00580 | 1085 | Pfam | PPR repeat | 182 | 211 | IPR002885 | - | |
| Cmo19g00580 | 1085 | Pfam | Cyclin, N-terminal domain | 870 | 968 | IPR006671 | - | |
| Cmo19g00580 | 1085 | PANTHER | OS01G0913400 PROTEIN-RELATED | 26 | 586 | - | - | |
| Cmo19g00580 | 1085 | CDD | CYCLIN | 879 | 953 | IPR013763 | - | |
| Cmo19g00580 | 1085 | Pfam | E motif | 506 | 567 | IPR046848 | - | |
| Cmo19g00580 | 1085 | Gene3D | - | 968 | 1027 | - | - | |
| Cmo19g00580 | 1085 | Gene3D | - | 868 | 966 | - | - | |
| Cmo19g00580 | 1085 | Gene3D | Tetratricopeptide repeat domain | 252 | 348 | IPR011990 | GO:0005515 | |
| Cmo19g00580 | 1085 | CDD | CYCLIN | 961 | 1031 | IPR013763 | - | |
| Cmo19g00580 | 1085 | SUPERFAMILY | TPR-like | 355 | 527 | IPR011990 | GO:0005515 | |
| Cmo19g00580 | 1085 | PANTHER | - | 26 | 586 | - | - | |
| Cmo19g00580 | 1085 | SMART | Cyclin_C_2 | 941 | 1063 | IPR004367 | - | |
| Cmo19g00580 | 1085 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 389 | 423 | IPR002885 | - | |
| Cmo19g00580 | 1085 | MobiDBLite | consensus disorder prediction | 760 | 782 | - | - | |
| Cmo19g00580 | 1085 | TIGRFAM | PPR: pentatricopeptide repeat domain | 363 | 389 | IPR002885 | - | |
| Cmo19g00580 | 1085 | TIGRFAM | PPR: pentatricopeptide repeat domain | 182 | 213 | IPR002885 | - | |
| Cmo19g00580 | 1085 | TIGRFAM | PPR: pentatricopeptide repeat domain | 391 | 424 | IPR002885 | - | |
| Cmo19g00580 | 1085 | TIGRFAM | PPR: pentatricopeptide repeat domain | 285 | 319 | IPR002885 | - | |
| Cmo19g00580 | 1085 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 283 | 313 | IPR002885 | - | |
| Cmo19g00580 | 1085 | SUPERFAMILY | Cyclin-like | 958 | 1064 | IPR036915 | - | |
| Cmo19g00580 | 1085 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 358 | 388 | IPR002885 | - | |
| Cmo19g00580 | 1085 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 179 | 213 | IPR002885 | - | |
| Cmo19g00580 | 1085 | Pfam | PPR repeat family | 75 | 123 | IPR002885 | - | |
| Cmo19g00580 | 1085 | Pfam | PPR repeat family | 284 | 331 | IPR002885 | - | |
| Cmo19g00580 | 1085 | Pfam | PPR repeat family | 388 | 436 | IPR002885 | - | |
| Cmo19g00580 | 1085 | SMART | cyclin_7 | 884 | 968 | IPR013763 | - | |
| Cmo19g00580 | 1085 | SMART | cyclin_7 | 969 | 1032 | IPR013763 | - | |
| Cmo19g00580 | 1085 | SUPERFAMILY | Cyclin-like | 851 | 968 | IPR036915 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo19g00580 | - | - | - | bhj:120078586 | 1031.17 |
WGDs- Genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo11g01399 | Cmo19g00580 | CST |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo19g00580 | Cmo-Chr19:6571314 | Cmo06g00199 | Cmo-Chr6:1082145 | 6.60E-113 | dispersed | |
| Cmo19g00580 | Cmo-Chr19:6571314 | Cmo11g01399 | Cmo-Chr11:9837969 | 1.10E-177 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi3g655 | . | . | . | . | . | . | . | . | Cmo19g00580 | Cmo11g01399 | . | . | . | . | . | Cpe04g00309 | Cpe15g00455 | Bhi05g01057 | Tan02g1772 | . | Lac12g0195 | . | . | . | Cla02g00659 | Cam02g0694 | Cec02g0707 | Cco02g0726 | Clacu02g0700 | Cmu02g0698 | Cre02g1013 | . | . | . | . | Lsi03g00554 | Csa07g00705 | . | Cme01g00101 | . | . | . | . | . | . | . | . | . | . | . | Cma11g01716 | Cma19g00567 | Car11g01125 | Car19g00427 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Chy01g00109 | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0010291 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 0 | 27 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cmo19g00580 | Cmo_Chr19 | FPKM | 13.504278 | 12.378721 | 20.411634 | 19.211926 | 22.12075 | 19.312283 | 22.560513 | 16.111395 | 17.567259 | 19.304647 |