Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00586 ATGAATTCTGGTTCGTCTCGCTCGGCTAATTCCTCCGCCCAGAGATCCAAGCGAATTCTCGACAATTCTTCTCCGTCGAGCCCTTCCAGTAGCGGTGCCAACAAGAAGAAACGGATCGACCAGAAAACCCTAGGCGTCGCATGGGGAGCCAATTCCAGTTCATCCTCTCGCTCCTCTCGCAAATCGCCCTTTCCAGATTTCGGAAGCTATATGGTAGAAAAGAACAGAAAACTGCACAATCAGTTTAACGTTGACGCTTCAAGTGCTTCACATAGTGGTACGAACTCCGGAAATCAAATATTTCAGGGCGTTTCTATATTTGTTGACGGTTTCACGATTCCTTCAAGTCAGGAATTGCGGGGTTATATGTTGAAGTATGGTGGCAGATTTGAGAATTATTTTTCAAGACGTAGCGTTTCTCATATAATTTGCAGCAATTTACCGGACAGTAAAGTAAAGAATCTCAGGTCCTTCAGCCGTGGACTTCCAGTTGTAAAACCCACATGGATCTTGGATTCTGTTGCTTCTAATAAGCTATTAAGTTGGGTTCCTTACCAACTTGATCAGCTTGTAAGTAATCAACCAAGATTATCAGCATTCTTTTCTATGAAAAAAGGTCCGATGTTGGAGAAACGCAAAATGTGCATGACTACTGAAAAGAACTATGAAACAGAGGATTCAATGTCCCTGGTGGCTGTGAATTTAAAGGATTCACGGTCTGAAGTGAATGAATTGATAGAATCTAGAGCAGAGATGCATTCCGACTCTGAAATGAATCTTCAAGATAATGCAGATACTAAACTGAATGAGAAGCCAAGTGATGATTTAGAGGCTGGCGAATTAAAGGATACAAGTATATCTGATGTAGATGAATCTATTGAATATGTACCACAAACCTGTGAAAGTTTTGAGATGCTTCCTCGAAATAATGCTGATGTAGAAGTAAAGAAAGAGCCAAGCAATGAAAAATGTGATCATGCAGATGAAGAACCAGGAATTGTTGATGTGGGTCAGAGCAGTGAAGAAAATATATCTAGTTTGCATGGTTTGTCTAAGTCAACTCACAATGATAGCACCAATAATTATTATAGCGATGGATCATCAAGTTCTTTGGTGGCCGGGTCTTCTAAGCTGCGGCATTCAAATTTTGGGAAGGCAGATTTTGTGGAAAGTTATTTCAAGAAGTCTAGGCTGCATTTCATTGGAACTTGGAGAAATCGTTACTATAAGCGTTTTCCACGTTCAGCTAGTGGGTCCAATTCTGTAACTTCTCATATCAGTGGTTCTTCCCATTATCAGTCTACCACTATTATCCACGTTGACATGGACTGCTTTTTTGTCTCAGTGGTTATTCGAAACAGTCCACAATTTAAGGATAAACCTGTAGCTGTGTGCCACTCGGATAATCCTAAAGGAACTGCAGAAATATCATCTGCAAACTACCCAGCTCGAGGTTATGGAGTCAGAGCGGGAATGTTTGTTAGAGATGCGAAAGCTCTTTGTCCCCAACTTGTTATTTTTCCATATGACTTCAAGTCCTATGAGGAGGTAGCCGATCAGTTCTATGACATATTGCATAAGCACTGTGAGAAAGTGCAGGCTGTAAGTTGTGATGAAGCATTTTTGGATATCTCAGGCACAGACAAGGTAGATCCTGAGGTTTTGGCTTCAAAAATTAGAAAAGAAATTTTTGATACAACTGGATGTACTGCAAGTGCTGGAATATCTACAAATATGCTAATGGCTCGCCTTGCTACCAGAACTGCAAAACCTGATGGCCAGTGTTACATTCCTTCGGAGAAGGTTGATGATTATTTAGATCCGCTTCCCATTAAGGATCTTCCCGGGATAGGGCGTGCCTTGGAGGAGAAGTTGAAGAAAAGAAGTGTATTTACTTGTGGTCAGCTGCGTATGATATCCAAGGATTCTCTTCAAAAAGACTTTGGATTGAAAACAGGGGAGATGTTATGGAATTATAGTCGGGGGGTGGACAATCGTGCTGTTGGGTTGATCCAGGAAAGCAAATCCATAGGAGCTGAAGTGAATTGGGGTGTTAGGTTCAAGGACTTCAAAGATTGTCAATGCTTTCTCTCGAATCTTTGTAAGGAGGTTTCATTACGATTGCATGGATGTGGAGTGCAGGGACGCACCTTTACCCTCAAGATAAAAAAACGAAGGAAAGATGCCGATGAACCGACAAAGTATATGGGCTGTGGAGATTGTGAAAACCTGAGCCACTCGCTGACGGTTCCTGATGCCACTGATGACCTGGAAATTCTTCAGAGGATTGCAAAGCAGCTTTTTGGGTTTTTTGTCATAGTTTTCCTTACTTTCTGGACTGGTCATGTAGATGTCAAAGAAATTCGTGGTATTGGTTTACAAGTTTCGAAGCTTCAAAATGTGGATATCTCTAAGCAAGGGATAAAAAGAAACTCTTTGGACGCATGGCTTCATTCGTCTGGAACGACAAATGTGGAAAATAGTACTGGTCCTTTGGTAAAGGAAAGGGCTAATATAGATAGTGAGAAACAGTGTGACTCTGGAGCTTTAGATCAGTTATCTGCTGATCCTACAAGCCATCTGATTCAGATGGAGAATAACCATCTCCACTGTGAATCTTTGAACCCGGTTACAGCTCCACCTCTGTGCAATCTGGATATTGGAGTTATAGGGAGCCTACCTCCTGAACTCTTTTCAGAATTAAATGAAATCTATGGTGGAAAACTAGATGATCTCCTAGCTAAAAGCAGATACAAAAGTGAAGCTTGCTCGTCTTCTTTAAGGGTTTCGTCTCAAGGACCAGGAGAAGATGTCCAAGAAAACAAAACACAGTTGGAAAATAAGCACATTGTTGAACGTTCCCCACCTGCACAGATTTCTGGGGAAGGATTGTGCAATGTGGTGACTCCTATACCCACCTCTGGATCTCATAGAATTGATTTACTACCTTCATCTCTAAGTCAAGTAGATCCGTCAGTATTACAAGAGCTACCTGAACCACTGAGGGATGACATACTTAAGCAACTCCCAGCACACAGGGGAAAAGAGCTTTCTTTAGAACATTCAGTAAAAATTCATCACGAATCTTGTGATGCCACTGCCAGTACGTCTGGCTCAATAGACTCTTTCACGGAGAATGGTCTTTGGTCTGGGAACCCTCCTCTATGGGTTGATAAGTTTAAAGCCAGTAATTGCTTGATATTACAATTTCTTGCAGAGACGTATACAGAATTGGGGTCACCTGGAAATCTGTATGGGATTTTGCTGAGGACTTTATCTAAATCTTGGCATCCTTCAGTTCCGGAATCTGATGGTTGGGATGGTGCTATTTACGGTTTATGTGAACTTCTTAAGGAGTACTTTAAGTTAAAGATAGAGCTGGACATCGAGGAGACCTATGCTTGTTTTCATCTTCTTAAGAGGTTAGCGATGAAATCCCAGGTTTTTCTGGAAGTCTTCAACATTATCGATCCTTACCTTCAGGGAGCAGTCAATGAATTCTACGGCGGAAGTTTGAAGGTGTAG 3525 41.62 MNSGSSRSANSSAQRSKRILDNSSPSSPSSSGANKKKRIDQKTLGVAWGANSSSSSRSSRKSPFPDFGSYMVEKNRKLHNQFNVDASSASHSGTNSGNQIFQGVSIFVDGFTIPSSQELRGYMLKYGGRFENYFSRRSVSHIICSNLPDSKVKNLRSFSRGLPVVKPTWILDSVASNKLLSWVPYQLDQLVSNQPRLSAFFSMKKGPMLEKRKMCMTTEKNYETEDSMSLVAVNLKDSRSEVNELIESRAEMHSDSEMNLQDNADTKLNEKPSDDLEAGELKDTSISDVDESIEYVPQTCESFEMLPRNNADVEVKKEPSNEKCDHADEEPGIVDVGQSSEENISSLHGLSKSTHNDSTNNYYSDGSSSSLVAGSSKLRHSNFGKADFVESYFKKSRLHFIGTWRNRYYKRFPRSASGSNSVTSHISGSSHYQSTTIIHVDMDCFFVSVVIRNSPQFKDKPVAVCHSDNPKGTAEISSANYPARGYGVRAGMFVRDAKALCPQLVIFPYDFKSYEEVADQFYDILHKHCEKVQAVSCDEAFLDISGTDKVDPEVLASKIRKEIFDTTGCTASAGISTNMLMARLATRTAKPDGQCYIPSEKVDDYLDPLPIKDLPGIGRALEEKLKKRSVFTCGQLRMISKDSLQKDFGLKTGEMLWNYSRGVDNRAVGLIQESKSIGAEVNWGVRFKDFKDCQCFLSNLCKEVSLRLHGCGVQGRTFTLKIKKRRKDADEPTKYMGCGDCENLSHSLTVPDATDDLEILQRIAKQLFGFFVIVFLTFWTGHVDVKEIRGIGLQVSKLQNVDISKQGIKRNSLDAWLHSSGTTNVENSTGPLVKERANIDSEKQCDSGALDQLSADPTSHLIQMENNHLHCESLNPVTAPPLCNLDIGVIGSLPPELFSELNEIYGGKLDDLLAKSRYKSEACSSSLRVSSQGPGEDVQENKTQLENKHIVERSPPAQISGEGLCNVVTPIPTSGSHRIDLLPSSLSQVDPSVLQELPEPLRDDILKQLPAHRGKELSLEHSVKIHHESCDATASTSGSIDSFTENGLWSGNPPLWVDKFKASNCLILQFLAETYTELGSPGNLYGILLRTLSKSWHPSVPESDGWDGAIYGLCELLKEYFKLKIELDIEETYACFHLLKRLAMKSQVFLEVFNIIDPYLQGAVNEFYGGSLKV 1174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6605185 6617959 - CmoCh19G005860.1 Cmo19g00586 403746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00586 1174 MobiDBLite consensus disorder prediction 46 63 - -
Cmo19g00586 1174 Gene3D - 609 663 - -
Cmo19g00586 1174 Pfam impB/mucB/samB family 440 586 IPR001126 GO:0006281
Cmo19g00586 1174 PIRSF REV1 50 1162 IPR012112 GO:0003684|GO:0006281|GO:0016779|GO:0042276
Cmo19g00586 1174 Hamap DNA polymerase IV [dinB]. 434 815 IPR022880 GO:0003887
Cmo19g00586 1174 Gene3D - 437 597 IPR043128 -
Cmo19g00586 1174 SUPERFAMILY DNA/RNA polymerases 433 668 IPR043502 -
Cmo19g00586 1174 SUPERFAMILY BRCT domain 64 189 IPR036420 -
Cmo19g00586 1174 Pfam impB/mucB/samB family C-terminal domain 674 803 IPR017961 GO:0003684|GO:0006281
Cmo19g00586 1174 Gene3D BRCT domain 90 187 IPR036420 -
Cmo19g00586 1174 ProSiteProfiles UmuC domain profile. 437 618 IPR001126 GO:0006281
Cmo19g00586 1174 ProSiteProfiles BRCT domain profile. 96 187 IPR001357 -
Cmo19g00586 1174 PANTHER DNA REPAIR PROTEIN REV1 35 1170 - -
Cmo19g00586 1174 MobiDBLite consensus disorder prediction 1 66 - -
Cmo19g00586 1174 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 673 796 IPR036775 GO:0003684|GO:0006281
Cmo19g00586 1174 Gene3D - 673 806 IPR036775 GO:0003684|GO:0006281
Cmo19g00586 1174 SMART BRCT_7 98 177 IPR001357 -
Cmo19g00586 1174 Gene3D - 387 421 - -
Cmo19g00586 1174 MobiDBLite consensus disorder prediction 249 287 - -
Cmo19g00586 1174 CDD BRCT_Rev1 100 187 - -
Cmo19g00586 1174 Gene3D - 454 508 - -
Cmo19g00586 1174 MobiDBLite consensus disorder prediction 313 336 - -
Cmo19g00586 1174 Pfam IMS family HHH motif 600 627 IPR024728 -
Cmo19g00586 1174 MobiDBLite consensus disorder prediction 313 332 - -
Cmo19g00586 1174 MobiDBLite consensus disorder prediction 267 287 - -
Cmo19g00586 1174 MobiDBLite consensus disorder prediction 1 34 - -
Cmo19g00586 1174 CDD PolY_Rev1 388 798 - -
Cmo19g00586 1174 Pfam BRCT domain, a BRCA1 C-terminus domain 98 185 IPR001357 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00586 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-] - csv:101214381 1907.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00021 Cmo-Chr7:112794 Cmo19g00586 Cmo-Chr19:6605185 2.43E-19 dispersed
Cmo19g00564 Cmo-Chr19:6459063 Cmo19g00586 Cmo-Chr19:6605185 6.58E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g647 . . . . . . . . Cmo19g00586 . . . . . . . Cpe15g00458 . . . . . . . Cla02g00651 Cam02g0684 Cec02g0698 Cco02g0718 Clacu02g0692 Cmu02g0687 Cre02g1006 . Cone8ag1100 . . Lsi03g00548 Csa07g00711 . . . . . . . . Bma03g01373 . . . . . Cma19g00572 . Car19g00431 . . . . . . . . . . . . . . . . . . Chy01g00104 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010766 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00586 Cmo_Chr19 FPKM 110.338821 112.325142 45.488071 49.683483 41.437943 41.60606 39.377903 73.211075 75.754517 77.107834