Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00588 ATGGCTTCCCCCAATCTAATCTTCCTAGCTTTCCTTATAACTCTATCCTCCATAAAACCCACAAACTCCGTCGAGTTCTCCGTCACCAACGCCGCCGGAAACACCGCCGGCGGCACTCGTTTCGACCTCGAAATCGGAAATTCCAACGCAGAGAACACTCTAAAAATTGCCACCGATTTCATATTGAAAACATTCCAACAGCAAGACGACGCCGACGCCGACATAAAGACCGTCCACAAAATCCGCCTCGTCATCGACGCCGAATACGACATCGTTTCCTACACTTCCGGCACCGACATATTCATCGCCGCAAACTACATCGCTGAATATCCCGGCGACCTGAGGAACGAATTCGCAGGAATTTTATACCAGGAGCTGACTAAAGTTTGGCAGTGGACTGGAAACGGTGAAGCGCCGGCCGGGCTAATCGAAGGGGTGGCGGAATTCGTGAGGCTGAAATCCGGGTTTGTCCCAGGAGAGTGGGCGGCGGCGGGAGATGGTGAGAGGTGGGATGATGGCGGCGGAGGGGTGACGGCGAGGTTTCTGGAGTATTTGGAGGGGTTGGGGAGTGGGTTCGTGGCGGAGCTTAACCGGAAAATGAGAAATGGTTACAGCGAAGATTACTTTGTGGAGCTGATGGCCGCGACGGCCGACGAGCTTTGGGCGGAGTACAAGGCGGAGTACGGCAAAATAATTAAATATTAA 705 53.19 MASPNLIFLAFLITLSSIKPTNSVEFSVTNAAGNTAGGTRFDLEIGNSNAENTLKIATDFILKTFQQQDDADADIKTVHKIRLVIDAEYDIVSYTSGTDIFIAANYIAEYPGDLRNEFAGILYQELTKVWQWTGNGEAPAGLIEGVAEFVRLKSGFVPGEWAAAGDGERWDDGGGGVTARFLEYLEGLGSGFVAELNRKMRNGYSEDYFVELMAATADELWAEYKAEYGKIIKY 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6622691 6623395 + CmoCh19G005880.1 Cmo19g00588 403748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00588 234 Pfam Peptidase of plants and bacteria 23 224 IPR007541 -
Cmo19g00588 234 PANTHER - 6 229 IPR007541 -
Cmo19g00588 234 PANTHER - 6 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00588 - - - cpep:111776403 441.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00587 Cmo-Chr19:6618846 Cmo19g00588 Cmo-Chr19:6622691 7.69E-33 tandem
Cmo19g00588 Cmo-Chr19:6622691 Cmo19g00589 Cmo-Chr19:6624694 1.61E-68 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g644 . . . . . . . . Cmo19g00588 . . . . . . . Cpe15g00459 . . . . . . . Cla02g00648 Cam02g0681 Cec02g0694 Cco02g0714 Clacu02g0689 Cmu02g0684 Cre02g1003 . . . . Lsi03g00545 . . . . . . Bda14g01462 . . Bma03g01372 . . . . . Cma19g00573 . Car19g00433 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015064 0 1 0 0 0 1 1 1 1 0 1 1 0 0 0 1 1 0 1 1 0 0 0 1 1 1 1 0 0 0 15
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00588 Cmo_Chr19 FPKM 0.106965 0.278899 8.139797 6.672596 209.586456 198.103699 200.301498 0.205001 0.0 0.0