Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00597 ATGGCGGCGACGACCGATTTAGATCCGATCCAGACAAATGCGCCTCCCAATCCACCACCAAACAAGCAGATCTTCATCCTCTCTGGCCAGAGCAACATGGCCGGGCGAGGCGGCGTCTTAAAGAAGCTCCACCGGTGGGACGGCGTGGTTCCACCAGAAGCGCAGCCGCATCCGTCGATATTCCGTCTGATCGCGAAGTTACATTGGGAGGTAGCGCATGAGCCACTGCACGCCGACATCGACACGAAGAAGACGTGCGGAGTGGGGCCAGGAATGGCGTTCGCGAACGGCGTGAGAGAGCGAGTAGGGACGGTGGCGCTGGTGCCGTGCGCTGTTGGAGGCACCGCCATCAAAGAGTGGGCGCGTGGAGAGAAGCTGTATGAGGATATGGTGAAGAGGGCGAGACATAGCGTGAAGGACGGCGGGGAAATTAGGGCAATTCTGTGGTTTCAAGGAGAGAGTGACACCTCTACTGAACATGATGCTGATGCGTACCAGGGGAATATGGAGGCTTTTGTTGCTAATGTGCGCCGGGATTTGGCCTTGCCTTCTCTCCCAATTATTCAGTTGCAATCTGGCTCTGCTTTCAGAAAGCCACAAATGCATGTCCATATGCCTCCTGAACTTGTGCTTAGCATGGATGTCCCAAAGGGGGTTTTGAAGTCTTCATACTTGCTACCATCTTTGATGCACCGTTTTGAATCGTTGATGTTAGCTAGCCAGCTTAGGAAGGAGATTAATTATCATTCGAACAGCCTCTGTATATCTAGCTCTTTGATTTTGGAAGCACTTACAACCCTTGGAAGTTGTGAGAGTTTTTCCTTTGAGCGGTTGGAATTGCTTGGAGATTCAGTATTGAAGTATGCTGTGAGCTGCCATCTCTTTCTCAAGTTCCCTGAAAAACATGAAGGACAGTTATCTTTTCGGCGTCAACAGTTTAAAATTTTACGATTCACCGTGATTAGATATTGGTGGGCTTTCACCGTGATTAGATATTGGTGGGCTTTCACCGTGATTAGATATTGGTGGGCTCAGGGCATAGTTAGTAGATATTGTTGGGCTGGGCTCAGGGCACAGTTAGTAGATATTGTTGGGCTCAGGGCACAGTTAGTAGATATTGTTGGGCTCAGGGCACAGTTTGTAGATATTGTTGGGCTCAGGGCACAGTTTGTAGATATTGTTGGGCTCAGGGCACAGTTTGTAGATATTGTTGGGCTCAGGGCACAGTTTGTAGATATTGTTGGGCTCAGGGCACAGTTAGTAGATATTGTTGGGCGCAGTGAGATTCTTCTAATATTTATCCAAAAGCGAATTCTCACCGCTGAAAGGTACAAGAAAGTAATTAGAGTCAGGAGAGAATTCCGTGATTGGAACAAATTTTCACAGTGTGGAGTGAGTTCCTTTCTGGTAGCACTGGCATCAGGAGTCAAGTATATTGAAAGAGTGAGGGAGGCTCAATTGGGAATGAGAGTGGAGAATGTGGTGTGTGTGGATGCAAAGGGATTGGAACTTAAAGAAGACAACCTCCATCTCACCACACAGGCTCAGGTCATTCTTGGTCAAATGCTGGCCGATGCCTACCTCACCCACTTCGCTCCACCACTCAAATCGAAGCCCTCGACCTAA 1626 48.89 MAATTDLDPIQTNAPPNPPPNKQIFILSGQSNMAGRGGVLKKLHRWDGVVPPEAQPHPSIFRLIAKLHWEVAHEPLHADIDTKKTCGVGPGMAFANGVRERVGTVALVPCAVGGTAIKEWARGEKLYEDMVKRARHSVKDGGEIRAILWFQGESDTSTEHDADAYQGNMEAFVANVRRDLALPSLPIIQLQSGSAFRKPQMHVHMPPELVLSMDVPKGVLKSSYLLPSLMHRFESLMLASQLRKEINYHSNSLCISSSLILEALTTLGSCESFSFERLELLGDSVLKYAVSCHLFLKFPEKHEGQLSFRRQQFKILRFTVIRYWWAFTVIRYWWAFTVIRYWWAQGIVSRYCWAGLRAQLVDIVGLRAQLVDIVGLRAQFVDIVGLRAQFVDIVGLRAQFVDIVGLRAQFVDIVGLRAQLVDIVGRSEILLIFIQKRILTAERYKKVIRVRREFRDWNKFSQCGVSSFLVALASGVKYIERVREAQLGMRVENVVCVDAKGLELKEDNLHLTTQAQVILGQMLADAYLTHFAPPLKSKPST 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6666050 6669463 + CmoCh19G005970.1 Cmo19g00597 403757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00597 541 Gene3D Ribonuclease III domain 233 313 IPR036389 GO:0004525|GO:0006396
Cmo19g00597 541 Gene3D SGNH hydrolase 21 218 IPR036514 -
Cmo19g00597 541 Gene3D SGNH hydrolase 440 532 IPR036514 -
Cmo19g00597 541 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 19 191 - -
Cmo19g00597 541 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 466 528 IPR005181 -
Cmo19g00597 541 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 22 199 IPR005181 -
Cmo19g00597 541 ProSiteProfiles Ribonuclease III family domain profile. 239 313 IPR000999 GO:0004525|GO:0006396
Cmo19g00597 541 SUPERFAMILY SGNH hydrolase 461 529 - -
Cmo19g00597 541 SMART riboneu5 258 375 IPR000999 GO:0004525|GO:0006396
Cmo19g00597 541 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 468 531 - -
Cmo19g00597 541 SUPERFAMILY RNase III domain-like 230 311 IPR036389 GO:0004525|GO:0006396
Cmo19g00597 541 PANTHER BNACNNG62850D PROTEIN 19 191 - -
Cmo19g00597 541 MobiDBLite consensus disorder prediction 1 21 - -
Cmo19g00597 541 CDD RIBOc 258 312 IPR000999 GO:0004525|GO:0006396
Cmo19g00597 541 SUPERFAMILY SGNH hydrolase 23 202 - -
Cmo19g00597 541 Pfam Ribonuclease III domain 276 312 IPR000999 GO:0004525|GO:0006396
Cmo19g00597 541 PANTHER BNACNNG62850D PROTEIN 468 531 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00597 - - - bhj:120078124 334.724
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00597 Cmo-Chr19:6666050 Cmo15g00610 Cmo-Chr15:2959193 1.15E-53 dispersed
Cmo01g01867 Cmo-Chr1:13543762 Cmo19g00597 Cmo-Chr19:6666050 1.21E-09 wgd
Cmo12g00512 Cmo-Chr12:3155943 Cmo19g00597 Cmo-Chr19:6666050 1.51E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g619 Blo02g00841 . . Bda08g00768 . . Bma05g00526 . Cmo19g00597 . . . . . . . Cpe15g00469 . . . . . . . Cla02g00633 Cam02g0666 . . Clacu02g0674 Cmu02g0668 . Cone12ag1073 . . . Lsi03g00529 . . . . . . . . . . . . . . . Cma19g00581 . Car19g00443 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009277 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00597 Cmo_Chr19 FPKM 52.241795 56.323177 37.937496 38.0467 26.811016 29.433435 28.019299 36.981255 35.71862 40.233025