Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00600 ATGAAAACCCCTTCCAACTCCCTTTCTCTCCTCCTCTTCTTCCTCTCTCTCTCCTCCCTTGTTCAATCTCTCACCTCCCCCTCCGATATCTCCGCCCTCAAGGCATTCAAATCCGCCGTCAAACCCTCCTCCATCACCCCTTGGTCCTGTTTAGCCTCCTGGAATTTCTCCGTCGATCCCTGTGCTCTCCCTCGCCGCACCTTCTTCTCCTGCGGCCTCCTTTGCAACTCCGCCGCCACTCGCATCACCCAACTTACCCTCGATCCCGCCGGCTACTCCGGCACCCTCTCTCCGCTCCTCTCTCGCCTCACTCAGCTGACCATTCTCGACATCTCTGATAATTCCTTCTCCGGCTTAATCCCCTCTGCAATTTTCTCTCTCCCCAATCTCCAAATCCTCACTCTCCGATCAAATTCCTTCACCGGATCCATTCCCCCTTCGATTTCCAACCTTAAATCCCTCGAATCGTTGGATTTCTCCCACAATTCCCTCGCCGGAAATCTCCCCAAATCTCTGCATTTCCTCTCTGTTTTAAGACGCCTCGATCTCAGCTTCAATCGACTCACTGGTTCCATTCCCAAACTCCCACCAAACTTGCTCGAATTGGCTTTAAAACGAAATTCAATTTCTGGGTATTTGGTTAAATCGTCCTTCTCCGACTCCACTCAGTTGGAGGTGATCGAACTCAGTGAGAACTCGCTCGCCGGAACCTTGCCGGCCTGGTTCTTCCTCCTCCCTTCCCTCCAGCAGATCAACCTGGCTAATAACAGCCTAACACGTCTCGAGATCTCCCCTGCCGCAGCCTCCGGCAGCGATCTTGTAGCCGTCGATTTGGGATTCAACAGAATTGAAGGGAACTTGCCGGTGAATTTCGCGAGCTATCCGGCGCTGTCATCGTTGTCGCTTCGGTACAATCGGCTACGTGGCGCGATCCCATTGGAGTTCAGTAAAAAGAAGACGATTAAGAGGTTGTACTTGGACGGGAACTTTTTGACTGGGAAACCGCCGGCGGCGTTCTTCACCAGCGGCGATGATCTGGTTTCCGGTAGCTTGGGGAATAATTGTCTGCAGGGATGTCCAGTGTCGTCTCAGCTGTGCGCTCCGTCGCAGAAACCGAACGCTGTTTGCAAGGAAGTGTACGGAAGCGGGAGGGGAAAAGGAAAACCGATGACCTGA 1176 53.23 MKTPSNSLSLLLFFLSLSSLVQSLTSPSDISALKAFKSAVKPSSITPWSCLASWNFSVDPCALPRRTFFSCGLLCNSAATRITQLTLDPAGYSGTLSPLLSRLTQLTILDISDNSFSGLIPSAIFSLPNLQILTLRSNSFTGSIPPSISNLKSLESLDFSHNSLAGNLPKSLHFLSVLRRLDLSFNRLTGSIPKLPPNLLELALKRNSISGYLVKSSFSDSTQLEVIELSENSLAGTLPAWFFLLPSLQQINLANNSLTRLEISPAAASGSDLVAVDLGFNRIEGNLPVNFASYPALSSLSLRYNRLRGAIPLEFSKKKTIKRLYLDGNFLTGKPPAAFFTSGDDLVSGSLGNNCLQGCPVSSQLCAPSQKPNAVCKEVYGSGRGKGKPMT 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6680362 6681537 - CmoCh19G006000.1 Cmo19g00600 403760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00600 391 Gene3D Ribonuclease Inhibitor 26 195 IPR032675 -
Cmo19g00600 391 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 4 385 - -
Cmo19g00600 391 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 4 385 - -
Cmo19g00600 391 Pfam Leucine rich repeat 197 258 IPR001611 GO:0005515
Cmo19g00600 391 Pfam Leucine rich repeat 129 188 IPR001611 GO:0005515
Cmo19g00600 391 SUPERFAMILY L domain-like 71 362 - -
Cmo19g00600 391 PRINTS Leucine-rich repeat signature 106 119 - -
Cmo19g00600 391 PRINTS Leucine-rich repeat signature 151 164 - -
Cmo19g00600 391 SMART LRR_typ_2 103 126 IPR003591 -
Cmo19g00600 391 SMART LRR_typ_2 175 202 IPR003591 -
Cmo19g00600 391 SMART LRR_typ_2 245 270 IPR003591 -
Cmo19g00600 391 SMART LRR_typ_2 127 151 IPR003591 -
Cmo19g00600 391 Pfam Leucine Rich Repeat 105 125 IPR001611 GO:0005515
Cmo19g00600 391 Pfam Leucine Rich Repeat 321 339 IPR001611 GO:0005515
Cmo19g00600 391 ProSiteProfiles Leucine-rich repeat profile. 177 199 IPR001611 GO:0005515
Cmo19g00600 391 Gene3D Ribonuclease Inhibitor 196 374 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00600 - - - csv:101221363 660.218
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01389 Cmo19g00600 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00704 Cmo-Chr16:3504582 Cmo19g00600 Cmo-Chr19:6680362 1.17E-65 dispersed
Cmo19g00600 Cmo-Chr19:6680362 Cmo14g01063 Cmo-Chr14:5832254 1.25E-08 dispersed
Cmo11g01389 Cmo-Chr11:9730110 Cmo19g00600 Cmo-Chr19:6680362 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g614 . Blo03g00087 . . . Bpe12g00298 . . Cmo19g00600 Cmo11g01389 . . . . . Cpe04g00301 Cpe15g00471 . . . . . . . Cla02g00630 Cam02g0664 Cec02g0668 Cco02g0692 Clacu02g0672 Cmu02g0666 Cre02g0985 . Cone8ag1111 Cone3ag0994 Cone10ag1015 Lsi03g00527 Csa07g00728 . Cme01g00080 . . Bda15g00844 . . . . Bma08g00506 . . . Cma11g01726 . Car11g01115 . . . Bhi11g01177 . . . . . . . . . . . . . . . Chy01g00086 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008155 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00600 Cmo_Chr19 FPKM 12.735178 13.097489 19.497768 18.20746 13.748568 13.116405 14.52559 7.930782 8.043248 7.530629