Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00602 ATGGCTCTGCACCCAAATAAACACAGAATCAAACTCCACCATAGCTCGCTCTTCTTCCTGGACTTCCTCTACTGCACTGAAGAACAGCAGCTTGAAACAGAGGATAACAATGGCGGCGGCTCCAATGACTTCCCTCTTTGGGAAGAGACGACCCATTTCCTTGTTTGTGAAGACGAGGAGCTCGATCGTTTGCTGTCCAAAGAACAGGACCAGAATCTTCAATACGGTGCTGTTCTGGAGAACTTGGTTCAAACAGAGGGTGCTCTGTTTTTGGCTAGAACAGAGGCCGTCGAATGGTTGCTTAAAGTTAATGCCTTTTATGGCTTCTCCACTCTCACAGCTCTCTTAGCCATTAATTACCTCGACAGAGTCCTCACCGGCCGCCATTTTCAAAGAGATAAGCCATGGATGCTTCAGCTTCTTGCCGTAACTTGCATTTCTTTAGCTGCCAAAGTCGAAGAAGTTCGTGTCCCTGTTCTTCAAGATCTCCAGGTGGAAGATTCTAAGTTCATTTTCGAAGCGAAAACGATACAGAGAATGGAGCTTTTAGTGCTCAGTGCTCTTCAATGGAAGATGCACGCAGTGACCCCTGTTTCATTTCTTGGCATTATAACAAAAGGGCTTGGATTAAAGAAGAATCAGCACTTTCAGAAAGAGTTTCTGAGACGCTTTGAGCGTATTCTCCTCTCTCTCGTCACTGATTCAAGATCGGTGGGGTTTCTTCCTTCTGTAATGGCGGTATCAGCAATGGTGAGCGTTGTTGAAGAGATGGGGAGCTGTAAGCCATTGGAGGAGTTTCAGGATCAGATTCTTAATGCCCTCAAAATAAACAAGGGAAGAGTGAAGGAGTGCTGCAAGGTGATAATGGAGGTATCAAAAGGGCAGGCCAAAGCAAAGGTATCAGGGAAGAGGAAGCATGTGGAGGAGGAGGAAGCAGAAGCAGAATCAGAAGGTGTAGCAGGGAGCCCAAATGGAGTAATAGAGGCCAATTTCAGCTGTGGAAGCTCCAACCATTCGTGGGGCATGGGGTCGCCTCTGTCACCCCACACGCCTTCTTCTTCCAAAAGAATCAGACCCACTCCATGA 1086 47.15 MALHPNKHRIKLHHSSLFFLDFLYCTEEQQLETEDNNGGGSNDFPLWEETTHFLVCEDEELDRLLSKEQDQNLQYGAVLENLVQTEGALFLARTEAVEWLLKVNAFYGFSTLTALLAINYLDRVLTGRHFQRDKPWMLQLLAVTCISLAAKVEEVRVPVLQDLQVEDSKFIFEAKTIQRMELLVLSALQWKMHAVTPVSFLGIITKGLGLKKNQHFQKEFLRRFERILLSLVTDSRSVGFLPSVMAVSAMVSVVEEMGSCKPLEEFQDQILNALKINKGRVKECCKVIMEVSKGQAKAKVSGKRKHVEEEEAEAESEGVAGSPNGVIEANFSCGSSNHSWGMGSPLSPHTPSSSKRIRPTP 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6691342 6693804 - CmoCh19G006020.1 Cmo19g00602 403762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00602 361 PANTHER CYCLIN D3.1 PROTEIN 50 340 - -
Cmo19g00602 361 Gene3D - 194 286 - -
Cmo19g00602 361 PANTHER CYCLINS 50 340 IPR039361 -
Cmo19g00602 361 CDD CYCLIN 93 185 IPR013763 -
Cmo19g00602 361 MobiDBLite consensus disorder prediction 302 323 - -
Cmo19g00602 361 ProSitePatterns Cyclins signature. 93 124 IPR006671 -
Cmo19g00602 361 Gene3D - 83 193 - -
Cmo19g00602 361 SMART Cyclin_C_2 195 325 IPR004367 -
Cmo19g00602 361 Coils Coil 297 317 - -
Cmo19g00602 361 MobiDBLite consensus disorder prediction 338 361 - -
Cmo19g00602 361 SUPERFAMILY Cyclin-like 53 193 IPR036915 -
Cmo19g00602 361 Pfam Cyclin, N-terminal domain 91 192 IPR006671 -
Cmo19g00602 361 Pfam Cyclin, C-terminal domain 195 309 IPR004367 -
Cmo19g00602 361 SMART cyclin_7 98 186 IPR013763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00602 K14505 CYCD3; cyclin D3, plant - csv:101222066 468.388
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00370 Cmo19g00602 CCT
Cmo04g00511 Cmo19g00602 CCT
Cmo04g00511 Cmo19g00602 ECH
Cmo16g00370 Cmo19g00602 ECH
Cmo11g01386 Cmo19g00602 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00254 Cmo-Chr9:1141404 Cmo19g00602 Cmo-Chr19:6691342 4.23E-72 dispersed
Cmo19g00602 Cmo-Chr19:6691342 Cmo05g00163 Cmo-Chr5:696188 9.34E-76 dispersed
Cmo01g01869 Cmo-Chr1:13549712 Cmo19g00602 Cmo-Chr19:6691342 2.30E-70 wgd
Cmo11g01386 Cmo-Chr11:9696714 Cmo19g00602 Cmo-Chr19:6691342 1.30E-153 wgd
Cmo12g00510 Cmo-Chr12:3144150 Cmo19g00602 Cmo-Chr19:6691342 8.31E-80 wgd
Cmo16g00370 Cmo-Chr16:1697863 Cmo19g00602 Cmo-Chr19:6691342 8.40E-91 wgd
Cmo19g00602 Cmo-Chr19:6691342 Cmo04g00511 Cmo-Chr4:2537126 1.16E-83 wgd
Cmo19g00602 Cmo-Chr19:6691342 Cmo07g00695 Cmo-Chr7:3141146 3.51E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g609 Blo02g00838 . . Bda08g00772 . . Bma05g00508 . Cmo19g00602 Cmo11g01386 . . . . . Cpe04g00298 Cpe15g00473 . . . . . . . Cla02g00627 Cam02g0660 Cec02g0664 Cco02g0687 Clacu02g0668 Cmu02g0662 Cre02g0981 . Cone8ag1114 . . Lsi03g00524 Csa07g00732 . Cme01g00076 . . Bda15g00846 Bda14g01452 . . Bma03g01357 . . Cmo04g00511 Cmo16g00370 Cma11g01728 Cma19g00585 Car11g01112 . Cpe14g00286 Cpe01g00427 . . . . . . . . . . . . . . . . Chy01g00082 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012026 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 3 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00602 Cmo_Chr19 FPKM 6.379991 5.731393 7.834846 7.587908 18.698452 16.318041 16.32687 4.889586 4.959223 5.332039