Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00604 ATGTCGACATATTCCATTCAGGGCCAGCCTCTTGAGGCCACCGTTGTTGGATGCACAAAATTGAAGGATACAGAATGGATATCAAGGCAGGATCCGTATGTGTGCCTTGAATATGGGAGTACAAAGTTCCGCACCACCACTTGCACTGATGATCTTGAACTGAATGTGAAATTTGATTGGGTTTGTGTAGATGGTGGAAGAAATCCGACGTTTCAACAGAAATTTGTGTTCTCTCTAATTGAAGGGCTTAGAGAGATTAATGTTACAGTTTGGAACAGCAACACTGTTACTTATGATGACTTCATTGGCACTGGAAAAATCCAATTAGCAAAAGTTCTATCAGAAGGGTATGATGATAGCTCCTGGTCACTTCAAACTAAAACTGGCAGACATGCTGGGGAAGTACGTCTGATTCTCCACTTTGCAAATGCCAAAAGGCCATCATCAAGTTTTGCGCCCTCGGCACCTCCATTTCAAGCACCTGCTCCACCCCAAGTTCCCGTGTACGCAACGATGCCACCGACACACCCGACAGCCTACGCTCATCCTACTCCTACACCATATGCATCATATCAATCTCCCTATCCTTCTTACCCACCCAGCTCAGTAGCATATCAAACATCCATGTATTCCTCCCCATATCCATCCGGGTATCCTCCTGCATCGTACCCGCCGCCTCCCTCGGCTTATCCTTCCAATCCTTACCCGCCACATCCACAAGCCTCATCCGTCTATCCTCCAAGTAGGTTTACGTCGAATCGAACGCTTTAA 771 46.69 MSTYSIQGQPLEATVVGCTKLKDTEWISRQDPYVCLEYGSTKFRTTTCTDDLELNVKFDWVCVDGGRNPTFQQKFVFSLIEGLREINVTVWNSNTVTYDDFIGTGKIQLAKVLSEGYDDSSWSLQTKTGRHAGEVRLILHFANAKRPSSSFAPSAPPFQAPAPPQVPVYATMPPTHPTAYAHPTPTPYASYQSPYPSYPPSSVAYQTSMYSSPYPSGYPPASYPPPPSAYPSNPYPPHPQASSVYPPSRFTSNRTL 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6695864 6698078 - CmoCh19G006040.1 Cmo19g00604 403764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00604 256 MobiDBLite consensus disorder prediction 217 243 - -
Cmo19g00604 256 Pfam C2 domain 11 116 IPR000008 -
Cmo19g00604 256 Gene3D C2 domain 9 143 IPR035892 -
Cmo19g00604 256 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 143 IPR035892 -
Cmo19g00604 256 ProSiteProfiles C2 domain profile. 1 123 IPR000008 -
Cmo19g00604 256 SMART C2_3c 10 121 IPR000008 -
Cmo19g00604 256 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU_ORTHOLOGUE AFUA_2G01790) 3 50 - -
Cmo19g00604 256 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU_ORTHOLOGUE AFUA_2G01790) 61 250 - -
Cmo19g00604 256 CDD C2 11 122 - -
Cmo19g00604 256 MobiDBLite consensus disorder prediction 215 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00604 - - - csv:101217489 294.664
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01385 Cmo19g00604 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00604 Cmo-Chr19:6695864 Cmo02g01512 Cmo-Chr2:8825626 5.66E-09 dispersed
Cmo01g01872 Cmo-Chr1:13560591 Cmo19g00604 Cmo-Chr19:6695864 6.18E-18 wgd
Cmo11g01385 Cmo-Chr11:9683459 Cmo19g00604 Cmo-Chr19:6695864 2.69E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g608 . . . . . Bpe12g00295 . . Cmo19g00604 Cmo11g01385 . . . . . Cpe04g00297 Cpe15g00474 . . . . . . . Cla02g00626 Cam02g0659 Cec02g0663 Cco02g0686 Clacu02g0667 . Cre02g0980 . . Cone3ag0993 Cone10ag1014 Lsi03g00523 Csa07g00733 . Cme01g00075 . . . . . . . . . . . Cma11g01729 Cma19g00586 Car11g01111 . . . . . . . . . . . . . . . . . . . Chy01g00081 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008674 0 3 0 0 1 0 2 0 1 1 1 0 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 4 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00604 Cmo_Chr19 FPKM 247.839325 250.760178 51.663429 44.917286 33.941025 32.5728 35.453609 199.706573 205.159012 198.170929