Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00605 ATGGCGGTTTCCACCACTTTCTCCTTCCCCGCCGCCGCTCTTCTAGCCATTTTCCTCTGTTTTCCCTCATTTTCTTCCGCTTCCGATTCCGATTCCGATTCACCCACCTTCTCCATCATCGACGAGAATGCAAAACACCACATGGGTATCCCTGATACTCTCGATTCTGATTCCGGCGGCTTCCCTAACCGGACCGACGACGAAATTGCGGCTCTGTTCGAGTCGTGGTTGGTCCATCATGGAAAAGCTTACAACGCTCTCGGCGAGAAGGAGCGGCGGTTTGAGATTTTCAAGGATAATCTCAGGTTCATCGATGAACATAACCGGGTGCCAAGGAGTTATAAGGTTGGATTGACCTGTTTCGCTGATCTCACCAATGATGAGTACAGGGCTCTGTTTTTGGGTGCCCGATTCTCCCCATTTCCTCGCCCATCCGCCGCGGATAGTGTGGAAGGAATAAACCAAATCGTCACCGGTGAGTTAATCTCTCTGTCGGAGCAGGAACTTGTGGACTGCGGTCGATCTAAGTTTCTTACCGGTTGCAAAGGTGGTTATATGGACAAAGCTTTCCGATTCATCATTGACAATGGTGGCATTGACACCGAGGAAGATTACCCTTATAAGGCCCTTGATAATTACACTTGCGATCTCGACCGGATCAATATAAATGTTGTCTCCATAGATGGGTATGTAAATGTGCCTCCGGGGAATGAGAGGTTGTTGAGAAGGGCTGTGGCTGGTCAACCAGTTAGTGTTGCCATTGACGCTGATTCCGAAGCCTTACAACATTACAAATCGGGTGTCTTCACCGAAGACTGCGGAACCGAGCTGGACCACGGTGTTGTTGTTGTTGGATATGGCACAGAAAATGGTTTAGACTACTGGATCATTAAGAATTCGTGGGGTGAAACTTGGGGAGAGAAGGGTTATATGAAGTTGGAGAGAAATGTGGTAAACACGGCAGGCAAGTGTGGAACAGCTCAATCAAGTGATGGAGTTTTTGACGTAACAACATACGGTGCTAAGCCTAATGCTGATATAACTCAGATTCTAGAAAAGGCATGGAAGGACGCTTGTGCTTCACCGATTCAAAGTAAATTAATTATTCCAAAAGAGACTTACACGTTAGGTGTAATCACAATGCTTGGTCCTTGCAAGAGTCCAATTGATATTGTCGTGCAAGGAACAATAATGGCACCCGTAGATATAACAGGTGATGGTTGGATTCAGTTCAGATATGTCGACAAAATTTCATTAACAGGTGGCGGAGTTTTTGATGGACAAGGACAAAAAGCTTGGGCAAGTAACGATTGTCATAAAAACCCCAAGTGTGCAAGAATTCCAATGAGTTTGAAGTTCAGCTTTGTAAAAGATTCAATTGTGAGGGACATAACGTCAAAAGACAGCAAGAATTTTCATGTCAATATCCTAGGTTGTAAGAATCTTACTTTCGATCACGTGACCATAAATGCACCGGGGAATAGTATTAATAGTGATGGAATTCACATGGGTCGTTGTGATGGAGTTAATATCATCAATTCAGTTATTGGTACTGGTGATGATTGTATCTCACTCGGAGATGGAAGCAGACAGGTAACAGTTACGAACGTGACGTGTGGACCTGGACACGGCATAAGCGTAGGAAGTCTAGGACAATATCTTGTTGAAGAACCGGTTGCTGGGCTTTATGTCAAAAATTTGTTCATCTGGCATATCTCTAGTAATATAATGGATCCAAATTCTACTGATTCCCCGACATCACCTACTGTTAAGTCCTTGGAAACTAAACCACCAGAAGCACAGCCTCAGGCTTCTGCTACCATTGGAATGAATAATGTAGCCCCTGATTCACCATCTAAGCCATCTCCCAGTGGCATAACTTCATGGACCAAAAGCTTGAGAATTACTCAATCACAGTCAGCTTCACAAGATGGCACGTCTGAGAATGCTGGGAAGTCAGCATTTGCACGTTTTACTAGTGGTTTAGGTTTGAATTTGTCTCCGAAATCCGCTGCACCCAATGATTCCTCTGATGGAACCTCTAAACCTGCCCAACCCGGTTTTGTGGGATCAATTACAAGAGGGTTGGTTGATTCTTCTAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCACGTTGTCTCCCAAAATAAGCGACGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAACATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAATCATATGGAAGAAGTCATCAAGTTCTTCGAAACACATCACAAGGGAAAATACAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCTTCGTTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCAGTTCAACTCATAATATCATTTTGCCGAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACCGGCTTGATGATTTCCAGTCTTCTTCTGTTTCTGAAGTTCTTTCCCACTGCTGACGAATCCATCGAATACTACAACCAGAGAAGGTGTTTCGATGGCAAGGGCCTGGTTTTACCAAGTCAGATTAGGTACGTCAAGTATTTCGAGCGTATTTTAACACACTTCAATGGAGAAAATCCTCCCAACCGCAGGTGCGTGCTTAGAGGGTTTCGTCTCCACCGATGCCCATATTGGATCAGGCCTTCCATTACGGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAATGCATCCAAGAATCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGGTAATAGTTTTCGCCTTGCCAGGGGAGCCTGGTCTAGCTGAGTTGTGTGGGGACTTCAAGGTGGAGGTTGTTCTAGTAGATACCTCGCCGAACAAGGACAATACTACCAAGAAGTTGGATGAAGGCTCAGGGTCAAAACCTTCTACAGTTCATGAGAGTGAAGTTTCTGAGAACCAAAACAGAAAACCAGGAACTAATGATAAAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGGGCAAGGAGGCAACTGCAGGATCAGCTGTCAAGACGACATCCAAATCTCAAACGACTGCGACTTCATCAGACGATGTTGCAAGTTCATCACATGCAACGAAGCAAGCTTCCCTGAGAGATGGTAGAGCGAAACAGACTGCTCTCACAGAAGTTCCGAACTCGGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTCGGCGACGACGACGACGACGAGATTGAGTAA 3372 44.57 MAVSTTFSFPAAALLAIFLCFPSFSSASDSDSDSPTFSIIDENAKHHMGIPDTLDSDSGGFPNRTDDEIAALFESWLVHHGKAYNALGEKERRFEIFKDNLRFIDEHNRVPRSYKVGLTCFADLTNDEYRALFLGARFSPFPRPSAADSVEGINQIVTGELISLSEQELVDCGRSKFLTGCKGGYMDKAFRFIIDNGGIDTEEDYPYKALDNYTCDLDRININVVSIDGYVNVPPGNERLLRRAVAGQPVSVAIDADSEALQHYKSGVFTEDCGTELDHGVVVVGYGTENGLDYWIIKNSWGETWGEKGYMKLERNVVNTAGKCGTAQSSDGVFDVTTYGAKPNADITQILEKAWKDACASPIQSKLIIPKETYTLGVITMLGPCKSPIDIVVQGTIMAPVDITGDGWIQFRYVDKISLTGGGVFDGQGQKAWASNDCHKNPKCARIPMSLKFSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGNSINSDGIHMGRCDGVNIINSVIGTGDDCISLGDGSRQVTVTNVTCGPGHGISVGSLGQYLVEEPVAGLYVKNLFIWHISSNIMDPNSTDSPTSPTVKSLETKPPEAQPQASATIGMNNVAPDSPSKPSPSGITSWTKSLRITQSQSASQDGTSENAGKSAFARFTSGLGLNLSPKSAAPNDSSDGTSKPAQPGFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCRSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTADESIEYYNQRRCFDGKGLVLPSQIRYVKYFERILTHFNGENPPNRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKMHPRIKSLSPEDFWFTAPKKGVIVFALPGEPGLAELCGDFKVEVVLVDTSPNKDNTTKKLDEGSGSKPSTVHESEVSENQNRKPGTNDKDDVFSDSESEGGSSKGKEATAGSAVKTTSKSQTTATSSDDVASSSHATKQASLRDGRAKQTALTEVPNSESEFKAMAADASVFTFGDDDDDEIE 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6699930 6709590 - CmoCh19G006050.1 Cmo19g00605 403765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00605 1123 MobiDBLite consensus disorder prediction 1043 1097 - -
Cmo19g00605 1123 SMART Inhibitor_I29_2 73 129 IPR013201 -
Cmo19g00605 1123 MobiDBLite consensus disorder prediction 666 688 - -
Cmo19g00605 1123 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 277 287 IPR025660 -
Cmo19g00605 1123 Pfam Cathepsin propeptide inhibitor domain (I29) 73 129 IPR013201 -
Cmo19g00605 1123 Pfam Glycosyl hydrolases family 28 359 568 IPR000743 GO:0004650|GO:0005975
Cmo19g00605 1123 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 591 983 - -
Cmo19g00605 1123 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 980 1121 - -
Cmo19g00605 1123 SUPERFAMILY Cysteine proteinases 65 322 IPR038765 -
Cmo19g00605 1123 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 813 873 IPR000387 GO:0016311|GO:0016791
Cmo19g00605 1123 Gene3D Cysteine proteinases 143 331 - -
Cmo19g00605 1123 ProSiteProfiles C2 tensin-type domain profile. 906 1054 IPR014020 -
Cmo19g00605 1123 Pfam Papain family cysteine protease 145 329 IPR000668 GO:0006508|GO:0008234
Cmo19g00605 1123 CDD Peptidase_C1A 145 325 IPR039417 -
Cmo19g00605 1123 Gene3D - 345 582 IPR012334 -
Cmo19g00605 1123 MobiDBLite consensus disorder prediction 1016 1042 - -
Cmo19g00605 1123 SMART pept_c1 134 334 IPR000668 GO:0006508|GO:0008234
Cmo19g00605 1123 MobiDBLite consensus disorder prediction 666 687 - -
Cmo19g00605 1123 Gene3D Protein tyrosine phosphatase superfamily 705 902 IPR029021 -
Cmo19g00605 1123 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 733 900 IPR029021 -
Cmo19g00605 1123 MobiDBLite consensus disorder prediction 578 628 - -
Cmo19g00605 1123 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 980 1121 - -
Cmo19g00605 1123 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 591 983 - -
Cmo19g00605 1123 SMART PTEN_C2_2 904 1093 IPR014020 -
Cmo19g00605 1123 MobiDBLite consensus disorder prediction 994 1008 - -
Cmo19g00605 1123 Gene3D - 56 137 - -
Cmo19g00605 1123 SUPERFAMILY Pectin lyase-like 330 571 IPR011050 -
Cmo19g00605 1123 ProSitePatterns Tyrosine specific protein phosphatases active site. 836 846 IPR016130 GO:0016311|GO:0016791
Cmo19g00605 1123 ProSitePatterns Polygalacturonase active site. 536 549 IPR000743 GO:0004650|GO:0005975
Cmo19g00605 1123 MobiDBLite consensus disorder prediction 991 1123 - -
Cmo19g00605 1123 CDD PTP_PTEN 730 895 IPR045101 GO:0016791
Cmo19g00605 1123 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 294 313 IPR025661 -
Cmo19g00605 1123 ProSiteProfiles Phosphatase tensin-type domain profile. 720 899 IPR029023 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00389 Cmo-Chr12:2409820 Cmo19g00605 Cmo-Chr19:6699930 4.26E-65 dispersed
Cmo14g00573 Cmo-Chr14:2920969 Cmo19g00605 Cmo-Chr19:6699930 4.33E-43 dispersed
Cmo19g00605 Cmo-Chr19:6699930 Cmo16g01103 Cmo-Chr16:7786669 6.58E-169 dispersed
Cmo19g00605 Cmo-Chr19:6699930 Cmo19g00606 Cmo-Chr19:6715562 1.84E-64 tandem
Cmo01g01875 Cmo-Chr1:13568015 Cmo19g00605 Cmo-Chr19:6699930 2.06E-87 wgd
Cmo11g01384 Cmo-Chr11:9670549 Cmo19g00605 Cmo-Chr19:6699930 7.62E-118 wgd
Cmo19g00605 Cmo-Chr19:6699930 Cmo07g00697 Cmo-Chr7:3149293 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00605 K01110 - csv:101222304 920.613