Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00609 ATGGCCAAGCCCTCTCCTCTTCCCCTTCTCTTCCTTTTTTCCATCTTCTCCACGGCGGCGATTGCCCTACACGTTCCGCCGCCTACTGCCGATCCTCAAGTAAAACATCCCCTCACTTTCTTTTTCTTCCCCTGGCATACTCCTCCTCCGCCTCCAGAATATCCTCCTCCTCCTCCTCCTCCGCCTCCACCTCCACCTCCACCACCTCCGCCTCCGCCTCCGCCTCCTCCTCCACCTCCACCACCTCCGCCTCCGCCTCAAAAACCTTACTGTGCCACTCCATCACCACCACCACCTAAACCAAAAGTCCACCCACCGCCGCCGCCGCCTCCGCCACCACCCAAACCAAAAGTGCACCCACCTCCGCCACCTAAAAAAAAAATCCGCCCACCGCCCCGACCGTCGCCGCCGCCGCCATCCATAAGCCCAAGAATCAAAATTGCTTACCAAACCATAAAAGATTTCAAACCCAGAATTGAAGATGACCCATTGAACATAACAAATTCATGGGTTGGAAAAGACGTTTGTAAATACAAAGGATTCATCTGCGACAAAGTCCCCAATTACAAAACCACCGCCTTGGCCGGAGTTAGCTTTAACAACTTCGGATTCGGTGGTTCTAACCTGATTCTCAATGGCTTCATCGACCGTTTGCCCGACATTACTTTCTTCCATGCAAACTCCAACAACTTCTCCGGCACCGTCCCCGAACTCATCTCCGATCTCCGATACTTCTACGAGCTCGATCTCAGCAACAACAAATTCTCCGGCGCCTTCCCTAACCAAGTCCTTGACGCCGCCAATCTCACCTTCTTGGATATCCGGTTCAACGACTTCTCCGGTCCCGTCCCCCCCAAGCTCTTCGATATGGACATTATCGCCGCCATCTTCCTTAACAACAACAAGTTTAACCATTTCATTCCGCCCAACCTCGGCAACACCCCTGCTCGTTACCTCACTTTTACGAGCAACGAGTTTTGCGGGCCAATCCCAAAAAGCATCGGAATCGGAAAGACAAAGAAAACCCTAATCGAGGTTCTCTTCTCCGACAACAAGCTCTCCGGGTGCTTACCGATGGAGATCGGGGTTTTAGAGAACACAATTCTCTTCGACGCAAGCAAGAACACCCTCACCGGCCCAATCCCCTACTCCTTCGGCTGCTTAGCCAAAATGGAGCTTCTCAACTTCGCCGACAACCGCCTCTACGGCGCCATTCCGGAGATGGTCTGCCAGTTACCCCACCTCCAAAACTTCACCCTTCGCAACAACTACTTCACCCAAGTCGGCCCCGTCTGCCGGAGCTTGATCGTAAAAAAGATTCTCGACGTTTCGGGGAACTGCATTCTCGGGCTGCCGGACCAGAAATCTAAGGAGCAATGTACCCATTTCTTCAGCCATGTTCAGTACTGCCCTGATGAGAAGTCAATGAAGTACATTCCTTGTAAAGGGGTTTGGTACTTGAATGAAGATCCGGCCGCCGCGCTCCGTCGGCCGGCGAGGAAGGCGACGGAGATGAGAACTTACGGGGCTCTTGTCCCGCATTAA 1545 53.14 MAKPSPLPLLFLFSIFSTAAIALHVPPPTADPQVKHPLTFFFFPWHTPPPPPEYPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPQKPYCATPSPPPPKPKVHPPPPPPPPPPKPKVHPPPPPKKKIRPPPRPSPPPPSISPRIKIAYQTIKDFKPRIEDDPLNITNSWVGKDVCKYKGFICDKVPNYKTTALAGVSFNNFGFGGSNLILNGFIDRLPDITFFHANSNNFSGTVPELISDLRYFYELDLSNNKFSGAFPNQVLDAANLTFLDIRFNDFSGPVPPKLFDMDIIAAIFLNNNKFNHFIPPNLGNTPARYLTFTSNEFCGPIPKSIGIGKTKKTLIEVLFSDNKLSGCLPMEIGVLENTILFDASKNTLTGPIPYSFGCLAKMELLNFADNRLYGAIPEMVCQLPHLQNFTLRNNYFTQVGPVCRSLIVKKILDVSGNCILGLPDQKSKEQCTHFFSHVQYCPDEKSMKYIPCKGVWYLNEDPAAALRRPARKATEMRTYGALVPH 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6726297 6728556 + CmoCh19G006090.1 Cmo19g00609 403769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00609 514 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 111 512 - -
Cmo19g00609 514 PANTHER BNAC05G26270D PROTEIN 111 512 - -
Cmo19g00609 514 MobiDBLite consensus disorder prediction 52 144 - -
Cmo19g00609 514 SUPERFAMILY L domain-like 161 451 - -
Cmo19g00609 514 Gene3D Ribonuclease Inhibitor 341 482 IPR032675 -
Cmo19g00609 514 PRINTS Proline rich extensin signature 25 37 - -
Cmo19g00609 514 PRINTS Proline rich extensin signature 48 69 - -
Cmo19g00609 514 PRINTS Proline rich extensin signature 69 85 - -
Cmo19g00609 514 PRINTS Proline rich extensin signature 86 103 - -
Cmo19g00609 514 MobiDBLite consensus disorder prediction 127 143 - -
Cmo19g00609 514 MobiDBLite consensus disorder prediction 52 119 - -
Cmo19g00609 514 Gene3D Ribonuclease Inhibitor 148 340 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00609 - - - cmax:111471075 744.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00513 Cmo-Chr4:2544714 Cmo19g00609 Cmo-Chr19:6726297 1.47E-137 dispersed
Cmo05g00165 Cmo-Chr5:710538 Cmo19g00609 Cmo-Chr19:6726297 6.71E-110 dispersed
Cmo11g01379 Cmo-Chr11:9632804 Cmo19g00609 Cmo-Chr19:6726297 0 dispersed
Cmo12g00508 Cmo-Chr12:3123391 Cmo19g00609 Cmo-Chr19:6726297 3.37E-108 dispersed
Cmo16g00372 Cmo-Chr16:1708200 Cmo19g00609 Cmo-Chr19:6726297 9.38E-133 dispersed
Cmo19g00607 Cmo-Chr19:6722807 Cmo19g00609 Cmo-Chr19:6726297 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g379 . . . . . Bpe12g00048 . . Cmo19g00609 . . . . . . . Cpe15g00478 . . . . . . . Cla02g00622 Cam02g0651 Cec02g0652 Cco02g0680 Clacu02g0659 Cmu02g0654 Cre02g0973 Cone12ag1078 Cone8ag1116 Cone3ag0989 Cone10ag1007 . Csa07g00737 . Cme01g00071 Blo04g00475 . . . . . . Bma08g00811 . . . Cma11g01736 Cma19g00589 . . Cpe14g00287 Cpe01g00429 . . . . . . . . . . . . . . . . Chy01g00077 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00609 Cmo_Chr19 FPKM 0.243618 0.466131 1.810952 1.454025 0.103966 0.0 0.164162 0.211421 0.231453 0.213534