Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo19g00614 | ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCCAACTCCGGCGCCGACCCGGCTGCCAATGGAGGCGGACAGCATGTGACGACGTCGTTGTATGTTGGAGATCTTGACGTGAACGTCACCGATTCCCAGCTTTATGATCTTTTTAATCAGGTGGGACAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACGACCCGTCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTGGATGCTTCAAGGGCATTGGATGTGCTAAACTTCACCCCTTTGAATGGGAATCCTATTAGAGTCATGTATTCGCATCGTGACCCTAGCATGCGGAAGAGTGGGTCTGGAAATATTTTTATCAAGAATTTGGACAAGGCAATTGATCACAAAGCGTTGCACGATACATTCTCTGCATTTGGAAACATTCTCTCCTGCAAGGTTGCTACAGATTCGTCTGGGCAGTCTAAAGGCTTTGGTTTCGTACAATTTGATACTGAGGAAGCTGCCTTAAAAGCTATAGAGAAGTTGAATGGTATGCTGCTCAACGACAAGCAGGTGTTCGTGGGACCGTTCCTTCGCAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACAAAATTTAACAATGTTTTTGTTAAGAATTTAGCAGAAACTACATCTGAAGAAGAATTGAGGAATATGTTTGGGGAGTTTGGACCAATTACCAGCGTTGTGGTCATGAGGGATGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTGAACTTTGAAAATGCGGATGATGCTGCTAGATCTGTTGATGCTCTCAATGGACACAAGGTTGATGGGAAAGAGTGGTACGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAACTGAAGAATCGATTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTGCAAACTTATATGTTAAGAATCTAGATGATACCATTGACGATGATAAACTGAAGGAGTTATTCTCTGCGTTTGGAACCATTACCTCATGCAAGGTTATGCGTGATCCCAATGGACTGAGTAGAGGGTCTGGCTTTGTTGCGTTCTCAACTCCTGAAGAGGCTTCTAGAGCTCTTGGAGAGATGAATGGAAGAATGATTGTGAGCAAACCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCCCAGTTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCGATGTATCCTCCAGGTGGTCCAGGTATCGGACAACAAATATTTTATGGACAAGCTCCACCTACTATTATTTCATCACAGCCTGGATTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCGATGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGCCAGCAAGGTCAAAGATCTGGTGGAAGGCGAGCTGGTGCTATTCAGCAAACCCAGCAGCCTGTTCCAATGATGCAGCAGCAGATGCTACCAAGAGGACGTGTCTACCGTTATCCTCCTGGGCGTGGACTGCCTGATCTTCCCATGCCGGGTGTTGCTGGAGGTATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCACCGCGGGATGCTGTCCACCCTCAACCAGTTCCTGTTGGCGCTTTGGCTTCTGCCCTTGCAAATTCAACTCCAGACCAGCAGAGAACGATGCTTGGGGAGAACCTTTATCCACTTGTGGAACAGCTAGAGCCTGATAATGCGGCCAAGGTAACAGGCATGCTATTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCACCGGAAGCTCTGAAGGCGAAGGTTGCCGAGGCCATGGAGGTTTTAAGAAGTGTTGCTCAGCAGACGGGCAATGCAGCTGCTGATCAGTTGGCTTCATTATCCCTGACTGACAACCTTGATTCCTAA | 1950 | 47.23 | MAQVPPQPQVPNSGADPAANGGGQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSMRKSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEELRNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVDALNGHKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGANLYVKNLDDTIDDDKLKELFSAFGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRALGEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPMMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANSTPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAAADQLASLSLTDNLDS | 649 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 6757298 | 6760972 | + | CmoCh19G006140.1 | Cmo19g00614 | 403774 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo19g00614 | 649 | CDD | RRM3_I_PABPs | 206 | 285 | - | - | |
Cmo19g00614 | 649 | CDD | RRM4_I_PABPs | 309 | 387 | - | - | |
Cmo19g00614 | 649 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 310 | 387 | IPR000504 | GO:0003723 | |
Cmo19g00614 | 649 | SMART | poly_2 | 563 | 626 | IPR002004 | GO:0003723 | |
Cmo19g00614 | 649 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 29 | 624 | IPR006515 | GO:0003723 | |
Cmo19g00614 | 649 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cmo19g00614 | 649 | SMART | rrm1_1 | 311 | 383 | IPR000504 | GO:0003723 | |
Cmo19g00614 | 649 | SMART | rrm1_1 | 29 | 102 | IPR000504 | GO:0003723 | |
Cmo19g00614 | 649 | SMART | rrm1_1 | 208 | 280 | IPR000504 | GO:0003723 | |
Cmo19g00614 | 649 | SMART | rrm1_1 | 117 | 189 | IPR000504 | GO:0003723 | |
Cmo19g00614 | 649 | Gene3D | - | 15 | 117 | IPR012677 | - | |
Cmo19g00614 | 649 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 28 | 106 | IPR000504 | GO:0003723 | |
Cmo19g00614 | 649 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 30 | 100 | IPR000504 | GO:0003723 | |
Cmo19g00614 | 649 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 209 | 277 | IPR000504 | GO:0003723 | |
Cmo19g00614 | 649 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 118 | 185 | IPR000504 | GO:0003723 | |
Cmo19g00614 | 649 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 312 | 380 | IPR000504 | GO:0003723 | |
Cmo19g00614 | 649 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 116 | 188 | IPR000504 | GO:0003723 | |
Cmo19g00614 | 649 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 18 | 633 | - | - | |
Cmo19g00614 | 649 | CDD | RRM2_I_PABPs | 114 | 190 | IPR045305 | - | |
Cmo19g00614 | 649 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 207 | 284 | IPR000504 | GO:0003723 | |
Cmo19g00614 | 649 | SUPERFAMILY | RNA-binding domain, RBD | 28 | 197 | IPR035979 | GO:0003676 | |
Cmo19g00614 | 649 | PANTHER | RNA BINDING PROTEIN | 18 | 633 | - | - | |
Cmo19g00614 | 649 | Gene3D | - | 118 | 196 | IPR012677 | - | |
Cmo19g00614 | 649 | SMART | rrm2_1 | 311 | 383 | IPR003954 | GO:0003676 | |
Cmo19g00614 | 649 | SMART | rrm2_1 | 29 | 102 | IPR003954 | GO:0003676 | |
Cmo19g00614 | 649 | SMART | rrm2_1 | 117 | 189 | IPR003954 | GO:0003676 | |
Cmo19g00614 | 649 | SMART | rrm2_1 | 208 | 280 | IPR003954 | GO:0003676 | |
Cmo19g00614 | 649 | Gene3D | - | 546 | 630 | - | - | |
Cmo19g00614 | 649 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 551 | 628 | IPR002004 | GO:0003723 | |
Cmo19g00614 | 649 | CDD | RRM1_I_PABPs | 29 | 108 | - | - | |
Cmo19g00614 | 649 | Gene3D | - | 296 | 400 | IPR012677 | - | |
Cmo19g00614 | 649 | Gene3D | - | 197 | 295 | IPR012677 | - | |
Cmo19g00614 | 649 | SUPERFAMILY | PABC (PABP) domain | 492 | 642 | IPR036053 | GO:0003723 | |
Cmo19g00614 | 649 | SUPERFAMILY | RNA-binding domain, RBD | 207 | 389 | IPR035979 | GO:0003676 | |
Cmo19g00614 | 649 | Pfam | Poly-adenylate binding protein, unique domain | 559 | 623 | IPR002004 | GO:0003723 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g01376 | Cmo19g00614 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo14g01557 | Cmo-Chr14:12424283 | Cmo19g00614 | Cmo-Chr19:6757298 | 1.85E-18 | dispersed | |
Cmo19g00614 | Cmo-Chr19:6757298 | Cmo18g00277 | Cmo-Chr18:1827056 | 1.84E-11 | dispersed | |
Cmo11g01376 | Cmo-Chr11:9611881 | Cmo19g00614 | Cmo-Chr19:6757298 | 0 | wgd | |
Cmo16g00375 | Cmo-Chr16:1721565 | Cmo19g00614 | Cmo-Chr19:6757298 | 0 | wgd | |
Cmo19g00614 | Cmo-Chr19:6757298 | Cmo04g00516 | Cmo-Chr4:2557223 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo19g00614 | K13126 | - | csv:101223017 | 1173.3 |