Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00614 ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCCAACTCCGGCGCCGACCCGGCTGCCAATGGAGGCGGACAGCATGTGACGACGTCGTTGTATGTTGGAGATCTTGACGTGAACGTCACCGATTCCCAGCTTTATGATCTTTTTAATCAGGTGGGACAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACGACCCGTCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTGGATGCTTCAAGGGCATTGGATGTGCTAAACTTCACCCCTTTGAATGGGAATCCTATTAGAGTCATGTATTCGCATCGTGACCCTAGCATGCGGAAGAGTGGGTCTGGAAATATTTTTATCAAGAATTTGGACAAGGCAATTGATCACAAAGCGTTGCACGATACATTCTCTGCATTTGGAAACATTCTCTCCTGCAAGGTTGCTACAGATTCGTCTGGGCAGTCTAAAGGCTTTGGTTTCGTACAATTTGATACTGAGGAAGCTGCCTTAAAAGCTATAGAGAAGTTGAATGGTATGCTGCTCAACGACAAGCAGGTGTTCGTGGGACCGTTCCTTCGCAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACAAAATTTAACAATGTTTTTGTTAAGAATTTAGCAGAAACTACATCTGAAGAAGAATTGAGGAATATGTTTGGGGAGTTTGGACCAATTACCAGCGTTGTGGTCATGAGGGATGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTGAACTTTGAAAATGCGGATGATGCTGCTAGATCTGTTGATGCTCTCAATGGACACAAGGTTGATGGGAAAGAGTGGTACGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAACTGAAGAATCGATTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTGCAAACTTATATGTTAAGAATCTAGATGATACCATTGACGATGATAAACTGAAGGAGTTATTCTCTGCGTTTGGAACCATTACCTCATGCAAGGTTATGCGTGATCCCAATGGACTGAGTAGAGGGTCTGGCTTTGTTGCGTTCTCAACTCCTGAAGAGGCTTCTAGAGCTCTTGGAGAGATGAATGGAAGAATGATTGTGAGCAAACCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCCCAGTTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCGATGTATCCTCCAGGTGGTCCAGGTATCGGACAACAAATATTTTATGGACAAGCTCCACCTACTATTATTTCATCACAGCCTGGATTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCGATGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGCCAGCAAGGTCAAAGATCTGGTGGAAGGCGAGCTGGTGCTATTCAGCAAACCCAGCAGCCTGTTCCAATGATGCAGCAGCAGATGCTACCAAGAGGACGTGTCTACCGTTATCCTCCTGGGCGTGGACTGCCTGATCTTCCCATGCCGGGTGTTGCTGGAGGTATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCACCGCGGGATGCTGTCCACCCTCAACCAGTTCCTGTTGGCGCTTTGGCTTCTGCCCTTGCAAATTCAACTCCAGACCAGCAGAGAACGATGCTTGGGGAGAACCTTTATCCACTTGTGGAACAGCTAGAGCCTGATAATGCGGCCAAGGTAACAGGCATGCTATTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCACCGGAAGCTCTGAAGGCGAAGGTTGCCGAGGCCATGGAGGTTTTAAGAAGTGTTGCTCAGCAGACGGGCAATGCAGCTGCTGATCAGTTGGCTTCATTATCCCTGACTGACAACCTTGATTCCTAA 1950 47.23 MAQVPPQPQVPNSGADPAANGGGQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSMRKSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEELRNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVDALNGHKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGANLYVKNLDDTIDDDKLKELFSAFGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRALGEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPMMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANSTPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAAADQLASLSLTDNLDS 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6757298 6760972 + CmoCh19G006140.1 Cmo19g00614 403774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00614 649 CDD RRM3_I_PABPs 206 285 - -
Cmo19g00614 649 CDD RRM4_I_PABPs 309 387 - -
Cmo19g00614 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723
Cmo19g00614 649 SMART poly_2 563 626 IPR002004 GO:0003723
Cmo19g00614 649 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 29 624 IPR006515 GO:0003723
Cmo19g00614 649 MobiDBLite consensus disorder prediction 1 22 - -
Cmo19g00614 649 SMART rrm1_1 311 383 IPR000504 GO:0003723
Cmo19g00614 649 SMART rrm1_1 29 102 IPR000504 GO:0003723
Cmo19g00614 649 SMART rrm1_1 208 280 IPR000504 GO:0003723
Cmo19g00614 649 SMART rrm1_1 117 189 IPR000504 GO:0003723
Cmo19g00614 649 Gene3D - 15 117 IPR012677 -
Cmo19g00614 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Cmo19g00614 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Cmo19g00614 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Cmo19g00614 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 185 IPR000504 GO:0003723
Cmo19g00614 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 380 IPR000504 GO:0003723
Cmo19g00614 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 188 IPR000504 GO:0003723
Cmo19g00614 649 PANTHER POLYADENYLATE-BINDING PROTEIN 18 633 - -
Cmo19g00614 649 CDD RRM2_I_PABPs 114 190 IPR045305 -
Cmo19g00614 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Cmo19g00614 649 SUPERFAMILY RNA-binding domain, RBD 28 197 IPR035979 GO:0003676
Cmo19g00614 649 PANTHER RNA BINDING PROTEIN 18 633 - -
Cmo19g00614 649 Gene3D - 118 196 IPR012677 -
Cmo19g00614 649 SMART rrm2_1 311 383 IPR003954 GO:0003676
Cmo19g00614 649 SMART rrm2_1 29 102 IPR003954 GO:0003676
Cmo19g00614 649 SMART rrm2_1 117 189 IPR003954 GO:0003676
Cmo19g00614 649 SMART rrm2_1 208 280 IPR003954 GO:0003676
Cmo19g00614 649 Gene3D - 546 630 - -
Cmo19g00614 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 551 628 IPR002004 GO:0003723
Cmo19g00614 649 CDD RRM1_I_PABPs 29 108 - -
Cmo19g00614 649 Gene3D - 296 400 IPR012677 -
Cmo19g00614 649 Gene3D - 197 295 IPR012677 -
Cmo19g00614 649 SUPERFAMILY PABC (PABP) domain 492 642 IPR036053 GO:0003723
Cmo19g00614 649 SUPERFAMILY RNA-binding domain, RBD 207 389 IPR035979 GO:0003676
Cmo19g00614 649 Pfam Poly-adenylate binding protein, unique domain 559 623 IPR002004 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01376 Cmo19g00614 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01557 Cmo-Chr14:12424283 Cmo19g00614 Cmo-Chr19:6757298 1.85E-18 dispersed
Cmo19g00614 Cmo-Chr19:6757298 Cmo18g00277 Cmo-Chr18:1827056 1.84E-11 dispersed
Cmo11g01376 Cmo-Chr11:9611881 Cmo19g00614 Cmo-Chr19:6757298 0 wgd
Cmo16g00375 Cmo-Chr16:1721565 Cmo19g00614 Cmo-Chr19:6757298 0 wgd
Cmo19g00614 Cmo-Chr19:6757298 Cmo04g00516 Cmo-Chr4:2557223 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00614 K13126 - csv:101223017 1173.3