Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00615 ATGGAGATTGCGCCGGTGGCCGCGTCTTCGATCGACAGAGATGCTGTTAACGATGCCGCTTCTGTTGATGCAGTTCAAGCATCGTCTTCGTCGCCGGATTCTGTACCAGGGAAAGAGGCGAACTTGTCCACGTCTTTTCCCGGACCTAAGTATGACGATGATGAAGAGGAAGAGGACGTCTGCCGGATCTGTAGGAACCCTAGAGATGCGGATAATCCGCTAAGTTATCCTTGCGCTTGCAGCGGCAGCATCAAGTTTGTTCACCAGGATTGTCTCCTTCAATGGCTGAATCACAGCAACGCCCGTCAGTGCGAGGTTTGCAAACATGCATTTTCCTTCTCCCCTGTTTATGCTGAGAATGCTCCATCAAGGCTACCTTTTCAGGAATTTATTTTTGGAATAGCAATGAAAGCTTGCCATGTCCTGCAATTCTTTTTACGTCTCAGTTTTGTGCTTTCTGTTTGGCTCCTCATCATACCTTTCATTACGTTTTGGATATGGCGGCTGGCTTTCGTGAGGAGTTTTGGGGAAGCCCAGAGATTATTCTTGAGTCACTTGTCTGCTACCGTTGTTCTTACTGATTGTCTTCATGGCTTCCTACTTTCTGCTAGCATTGTATTTATATTTCTTGGAGCTACCTCCTTGAGAGATTACTTCAGGCATTTACGGGAGCTTGGAGGTCCGGAGGGCGAGCGAGAAGATGATGCAGATAGAAATGGAGCTCGTGCTGTAAGAAGACCTCTGGGACAAGCTAATAGAAATTTTGCTGGTGATGCAAATGGTGAAGATGCGGGTGGAGGCCAAGTCCTTGCTGGAGCAGGTCAAATAATTAGGAGGAATGCGGAAAATGTTGCTGCTCGGTGGGAGATGCAAGCTGCTCGTCTTGAGGCTCATGTCGAACAGATTTTTGATGTGGATGATGCTGATGGTGCAGAAGATGTGCCTTTCGATGAGCTTGTTGGCATGCAGGGTCCTGTGTTTCATTTAGTTGAGAACGCATTCACAGTTTTAGCCAGCAATATGATATTTCTTGGTGTTGTTATCTTTGTGCCCTTTACATTAGGTCGGATCATACTTCATTACATATCATGGCTTTTCTCTTCAGCCAGTGGTCCAGTTTTCTCGACGGTGATGCCATTTACGGAGTCAGCTCTCTCCTTGGCAAATATCACATTGAAAAATGCATTGACAGCTGTTGCAAATTTGTCATCAGATGGTAAAGAAAGTGGTCTACTTGATCAGGTTGCAGAAATGTTGAAAGTCAACTCCAGTACACTAAACAATGTCTCAAACAACATAACTGCTCCACTTTCGGTGGATCTTTTGGAACGGGCAGCTACTGGAACATCGAGGCTTTCTGATGTTACAACTCTTGCTGTAGGCTACATATTTATATTTTCTTTAGTTTTCTTCTATCTTGGGACTATTGCTTTGATTCGATATACTCGAGGAGAGCCTTTGACTATGGGAAGGTTGTATGGCATCGCATCTGTCGCCGAAGCCATCCCCTCTCTCCTTAGGCAGTTCATGGCAGCGATGAGGCATTTGATGACCATGGTTAAGGTTGCTTTCCTTTTGGTCATAGAACTTGGGGTATTTCCCTTGATGTGTGGTTGGTGGCTTGACATTTGTACTGTTAGGATGTTTGGAAAGTCAATGGCTCAGCGCGTTCAGTTCTTTTCAATTTCTCCTCTAGCAAGCTCATTGGTTCACTGGGCTGTTGGCATTGTATATATGCTACAAATAAGCATATTTGTCAATCTTCTTCGAGGGGTTTTGCGCAGTGGAGTTTTGTATTTTCTTCGTGATCCAGCTGATCCAAATTATAATCCTTTCCGAGATTTAATTGATGATCCAATGCACAAGCATGCTCGCAGGGTTCTTCTATCTGTTGCAGTGTATGGAAGTTTAATTGTAATGCTGGTGTTCTTACCTGTCAAACTTGCTATGAGGATGGTTCCCTCCATTTTTCCTCTTGATATATCGGTATCGGACCCCTTCACAGAGATTCCAGCTGACATGCTTCTCTTTCAAATCTGCATTCCTTTTGCTATTGAGCATTTTAAATTGAGAACAACAATCAAATCCCTTCTCCACTGCTGGTTTACTGTGGTTGGTTGGGCCCTTGGATTAACAGATTATTTACTTCCCAGAACTGAAGAAAACGTTGGCCAGGAAAATGGGAATGGAGAGCAGCCTGGGTTGCAAGAAGAACTGCAGGTGGTACGTCTAGGTGCCCTGGAACAGGCTTTGGTGGCCCATGCCGCAGCTAACGAGCCAAACCAAGTTGTTCCTGCATCTGGGAACTTGACTAACGAGGAGTATGATAACGAAGAGCAGTCTGATTCAGAGAGGTATAGCTTCGCTCTCCGCATTGTCCTTTTGTTGGTTGTGGCATGGATGACTCTTCTTGTCTTCAACTCAGCATTGATAGTGGTACCAACATCACTTGGACGGGCACTTTTCAACGCCATTCCGCTTCTTCCCATCACACATGGTATCAAGTGCAACGGTGCGATTACCTACCATATGTATGCTTTTGTCATCGGGAGCTACGTTATTTGGACGGTGATAGCTGGTGCCAGATATTCCATTGAATATGTTAAAGCAAGGAGGGTGACTGTTTTATTGGGCCAGATATGGAAATGGTTTGCCATTGTCGTCAAGAGTTCTGCACTTCTGTCAATTTGGATCTTCCTCATTCCAGTATTGATTGGCTTGTTATTTGAGCTTCTGGTCATTGTGCCTATGCGAGTTCCAGTGGATGAAAGCCCAGTTTTCCTCTTGTATCAGGACTGGGCATTGGGCTTAATTTTTCTTAAGATCTGGACTAGACTGGTAATGTTAGATCATATGATACCTCTGGTGGATGATAGTTGGAGAGTGAAGTTTGAAAGAGTTAGAGAAGATGGCTTCTCCAGGCTGCAAGGGTTCTGGGTTTTGAGGGAAATAGTTGTTCCAATCATAATGAAGCTACTGACAGCACTATGCGTACCGTACGTACTAGCTAGAGGAGTGTTTCCTGTGCTCGGCTACCCGCTGATTGTCAACTCAGCTGTTTATCGATTTGCTTGGATTGGATGCCTTTGTGTTAGCATGTTGTGTTTTTGTGCCAAGAGATTTCATGTATGGTTCACCAACCTTCACAATTCCATTCGCGACGATCGTTATCTCATCGGTCGTCGACTCCATAACTTCGGTGAAGACTCTGGAGAGAAGCAAAGAGATGTGGGGACTTCGTCCGAGACACAAGATGTTCTGCTGGGCACCGCCCATGCAGCAGCAGCTGGGGAAGGATTGCGGCAGAGACATGTTGTTGCTAACTGA 3327 45.24 MEIAPVAASSIDRDAVNDAASVDAVQASSSSPDSVPGKEANLSTSFPGPKYDDDEEEEDVCRICRNPRDADNPLSYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPSRLPFQEFIFGIAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHLSATVVLTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGPEGEREDDADRNGARAVRRPLGQANRNFAGDANGEDAGGGQVLAGAGQIIRRNAENVAARWEMQAARLEAHVEQIFDVDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFTLGRIILHYISWLFSSASGPVFSTVMPFTESALSLANITLKNALTAVANLSSDGKESGLLDQVAEMLKVNSSTLNNVSNNITAPLSVDLLERAATGTSRLSDVTTLAVGYIFIFSLVFFYLGTIALIRYTRGEPLTMGRLYGIASVAEAIPSLLRQFMAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDICTVRMFGKSMAQRVQFFSISPLASSLVHWAVGIVYMLQISIFVNLLRGVLRSGVLYFLRDPADPNYNPFRDLIDDPMHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMVPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLHCWFTVVGWALGLTDYLLPRTEENVGQENGNGEQPGLQEELQVVRLGALEQALVAHAAANEPNQVVPASGNLTNEEYDNEEQSDSERYSFALRIVLLLVVAWMTLLVFNSALIVVPTSLGRALFNAIPLLPITHGIKCNGAITYHMYAFVIGSYVIWTVIAGARYSIEYVKARRVTVLLGQIWKWFAIVVKSSALLSIWIFLIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMIPLVDDSWRVKFERVREDGFSRLQGFWVLREIVVPIIMKLLTALCVPYVLARGVFPVLGYPLIVNSAVYRFAWIGCLCVSMLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEDSGEKQRDVGTSSETQDVLLGTAHAAAAGEGLRQRHVVAN 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6761852 6767300 - CmoCh19G006150.1 Cmo19g00615 403775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00615 1108 PANTHER ZINC FINGER, RING-CH-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 48 1056 - -
Cmo19g00615 1108 Coils Coil 278 298 - -
Cmo19g00615 1108 MobiDBLite consensus disorder prediction 22 54 - -
Cmo19g00615 1108 SUPERFAMILY RING/U-box 55 111 - -
Cmo19g00615 1108 Pfam RING-variant domain 61 107 IPR011016 GO:0008270
Cmo19g00615 1108 ProSiteProfiles Zinc finger RING-type profile. 61 108 IPR001841 -
Cmo19g00615 1108 PANTHER SSM4 PROTEIN 48 1056 - -
Cmo19g00615 1108 SMART ringv_2 60 108 IPR011016 GO:0008270
Cmo19g00615 1108 ProSiteProfiles Zinc finger RING-CH-type profile. 53 114 IPR011016 GO:0008270
Cmo19g00615 1108 MobiDBLite consensus disorder prediction 22 41 - -
Cmo19g00615 1108 CDD RING_CH-C4HC3_MARCH6 60 109 - -
Cmo19g00615 1108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 119 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00615 K10661 MARCH6, DOA10; E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27] - csv:101222781 1973.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01375 Cmo19g00615 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00615 Cmo-Chr19:6761852 Cmo17g00289 Cmo-Chr17:1744669 6.98E-13 dispersed
Cmo11g01375 Cmo-Chr11:9605842 Cmo19g00615 Cmo-Chr19:6761852 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g385 . Blo15g00755 Bda06g01078 . Bpe07g00369 . . Bma12g00433 Cmo19g00615 Cmo11g01375 . . . . . Cpe04g00289 Cpe15g00481 Bhi05g01074 . . . . . . Cla02g00612 Cam02g0641 Cec02g0640 Cco02g0661 Clacu02g0645 Cmu02g0640 Cre02g0964 . . Cone3ag0981 Cone10ag1001 . Csa07g00748 . Cme01g00060 . . . . . . . . . . . Cma11g01740 Cma19g00597 . . . . . . . . . . . . . . . . . . . . Chy01g00063 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005956 2 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00615 Cmo_Chr19 FPKM 7.908451 6.365629 7.051444 8.505899 5.015475 0.0 4.310969 9.782669 10.503992 12.591332