Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00618 ATGCGTCTGCTAAGAAGTTTCTACACCCTTGTGAAGAATGCTTCGTTCTCCTTCCAATTGATGTGGGATCTCACGAATGGGCGGTTGTCGTGTCGACACGAGTTGAGCTTGCAAATGAATTTCAGGAGCTTTGAGGATATGCCAACAGGAGAAGGCATCATGGCTAAGACACAAGGAAATTTCACATTAACCAGACAACCTTCCATATACTCTTTAACCTTTGATGAATTTCAGAACACATGGAATGGACTTGGAAAGGATGTTGGTTCAATGAATATGGATGAACTTCTAAAGAACATATGGACAGCAGAAGAGTCTCAGGCAATGACATCTACAGCTGCTGCTGTGGGTGGAGCTGGAAGCACCAATGGTGGGAACTTGCAGAGACAAGGTTCATTAACATTACCACGGACCATTAGTCAAAAAACGGTTGATGAAGTTTGGAAAGACTTGAGCAAAGAGGGGGGAAGTGGAGTCGAGGCAACGCCTCGACGACAACCGACGTTAGGGGAGGTGACATTGGAGGAGTTCTTAGCTAGAGCTGGAGTGGTAAGAGAGGAGCCTCGACGTGTCGAGGAGCGGCCGTTTAGCTGTGGATTTTTTGGTGGATTGTCAAGAGATGACAACAATGCTAGCTTGGCTCTTGGGATGTTCATGGAAAATCAGATAGCTGAGAACAAAAACAATGCTGGTTTGGCTCATGGGATGTTAAGGGCAGGAGCTGTAAGGTCTCCTCAGCAGCAGCAGCAGCCACTTTTTCCCAAACCAGCTACTGTGACCTTTGCTTCTTCAATGAATTTAGTGAACAATCATCCACAGCATTCTACTGGAGCTGCTACTAATTTGGTTGTGGCTCCCAAACCTTCTTTATATGATCCTTTACTTCAGGGCAGCGGCGTCGGTGCGGTCGGTTTAGGCACGGGAGGTGTAACTGTTGCTTCAAGATCTCCTACAAGCACAATATCATCTGACATGATTACAAAAAACAGCATATCTACATCTTCATTTTCACCGGTTCCATATTCGTTTGGTCGGGGAAGGCGAAGCGGTGGAGCGTTGGAGAAAGTAGTCGAGAGGAGGCAACGACGAATGATAAAGAACCGAGAGTCGGCTGCAAGATCACGGGCTCGTAAACAGGCATACACCTTAGAACTTGAAGCAGAAGTTGCAAAACTCAAAGAAATGAACCAAGAATTGCAGAAGAAACAGAGAGAGATAATGGAAACCCAGAAAGATCAGGTTTTGGAGAAGATGAAATGTCATTTTGGTGCCAAAAGGCTCTGCTTAAGAAGAACACTGACAGGCCCTTGGTAG 1314 45.89 MRLLRSFYTLVKNASFSFQLMWDLTNGRLSCRHELSLQMNFRSFEDMPTGEGIMAKTQGNFTLTRQPSIYSLTFDEFQNTWNGLGKDVGSMNMDELLKNIWTAEESQAMTSTAAAVGGAGSTNGGNLQRQGSLTLPRTISQKTVDEVWKDLSKEGGSGVEATPRRQPTLGEVTLEEFLARAGVVREEPRRVEERPFSCGFFGGLSRDDNNASLALGMFMENQIAENKNNAGLAHGMLRAGAVRSPQQQQQPLFPKPATVTFASSMNLVNNHPQHSTGAATNLVVAPKPSLYDPLLQGSGVGAVGLGTGGVTVASRSPTSTISSDMITKNSISTSSFSPVPYSFGRGRRSGGALEKVVERRQRRMIKNRESAARSRARKQAYTLELEAEVAKLKEMNQELQKKQREIMETQKDQVLEKMKCHFGAKRLCLRRTLTGPW 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6778771 6782103 + CmoCh19G006180.1 Cmo19g00618 403778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00618 437 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 357 408 IPR004827 GO:0003700|GO:0006355
Cmo19g00618 437 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 362 377 IPR004827 GO:0003700|GO:0006355
Cmo19g00618 437 CDD bZIP_plant_BZIP46 359 413 - -
Cmo19g00618 437 Pfam bZIP transcription factor 359 409 IPR004827 GO:0003700|GO:0006355
Cmo19g00618 437 Gene3D - 357 412 - -
Cmo19g00618 437 SMART brlzneu 355 420 IPR004827 GO:0003700|GO:0006355
Cmo19g00618 437 MobiDBLite consensus disorder prediction 112 133 - -
Cmo19g00618 437 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 48 437 IPR043452 GO:0003700|GO:0045893
Cmo19g00618 437 SUPERFAMILY Leucine zipper domain 359 407 IPR046347 GO:0003700|GO:0006355
Cmo19g00618 437 Coils Coil 378 412 - -
Cmo19g00618 437 PANTHER ABSCISIC ACID-INSENSITIVE 5-LIKE PROTEIN 7 48 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00179 Cmo-Chr5:772776 Cmo19g00618 Cmo-Chr19:6778771 1.19E-111 dispersed
Cmo14g00296 Cmo-Chr14:1376276 Cmo19g00618 Cmo-Chr19:6778771 8.66E-56 dispersed
Cmo19g00618 Cmo-Chr19:6778771 Cmo20g00183 Cmo-Chr20:907674 4.95E-16 dispersed
Cmo11g01370 Cmo-Chr11:9574499 Cmo19g00618 Cmo-Chr19:6778771 0 wgd
Cmo12g00499 Cmo-Chr12:3067064 Cmo19g00618 Cmo-Chr19:6778771 1.45E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11626 PF00170 bZIP_1 5.00E-12 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00618 K14432 - csv:101203950 594.349