Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00625 ATGAAAAAATCCAGAAAAAACAAGATGACCCTTCTCATTTCCATCTTCTTCTTCCTCCTCCTCCTCCTCCGCCTCTCCACCGCCGCTCCACCCGGTCCTCGAGGGTATCTTCTCAATTGCGGTGCCTCCCAATTGGCCCCCAAGGTGACCGTCGGCAGCCTCCAATACATCACCGATGAGGGCTTCATCTCCGTTGGGAACATCACAAAGCTTCCTGATCCACATCTGGTGCCGATTCTGTCGACATTGCGCTATTTTCCCGACAAATCGGCCCGGAAATACTGCTACATGATTCCGGTGCTTAAGGGAGGCAAATACATGGTGAGGACGACGTATTACTACGGCGGATACGACGGCGGGAAGACTCCGCCGGTTTTCGACCAGATTATAGAAGGGACCAAATGGAGCGTCGTTAACACGACGGATGATTACGCCAGTGGGTTGTCGTCGTTTTACGAGATTGTGGTGGTGGCGATGGGGAAGATGATGAGCATTTGCTTAGCAAGGAACCATCATACGGATCCGAGTTCGAGCCCATTCATTTCAGCTCTGGAGTTGGAGTATTTGGATGATTCTGTTTATAACACCACGGATTTCAAGAACCATGCTCTCAGTCTGGTTGCTAGAAGCAGCTTTGGACCTGAAGCTGATGTCATTGGCTTTCCAGATGATGTATTCAACCGGCAATGGCATCCATTTCTTGATGAGCATCCAGTGGTAACATCCCATGTGAACATTACTCCTTCAACCTTCTGGAATCTGCCACCAACGAAGGTGTTTTACAATGGCATGACGACGAGCCGGGGAAAGTCGCTCAAATTCAACTGGCCTCCGTTCCCACTTCCAGAAGCCTACTACTACATCTCGCTATACTTTCAGGATAATCGGTCGCCGAGTCTTTATAGCTGGAGGGTGTTCAGTGTTGTAATAAATGGCAAGACTTTCTTTTCAAACCTCAATGTCTCTGCTAATGGTGTGTCTGTTTACAGTGCGAGATGGCCTTTGTCTGGACAGACCCTCTTAGAACTAATCCCTGCAGACAACATGCCTGTTGGCCCTGTGATTAGTGCTGGTGAGATCCTTCAGGTTTTTCGCCTCACTGGAAGAACGTTAACTAGGGATGTGATGGCAATGGAGGACTTGGCACGAAGCTTGAACTACCCGCCCCACGATTGGAGCGGCGATCCTTGCTTGCCTAAGGATCATTTCTGGACTGGAGTTACTTGTTCAGATGGAAAACTTGCTCGAGTTACCACTTTGAATTTGACAAACTTTGGCATATCTGGGACGCTTCCTCCAAGCATAAACAATTTAACTGCGCTCTCTCATCTTTGGCTTGGTAACAACAAGCTCTCAGGCATTATTCCTGATATAGGTTCATTGAAGGAGCTACGAACACTGCATCTGGAAAACAACCAATTTGAAGGGATAATTCCTCATTCGCTCGAGAAGCTTCCGCATATTCATGAAGTATTTCTCCAAAATAATAACAATCTTAAGTCGAAAGCTCTCGAAGCACTGCAGAAGCTAGGCATACACATCGAGCTGTAG 1551 47.78 MKKSRKNKMTLLISIFFFLLLLLRLSTAAPPGPRGYLLNCGASQLAPKVTVGSLQYITDEGFISVGNITKLPDPHLVPILSTLRYFPDKSARKYCYMIPVLKGGKYMVRTTYYYGGYDGGKTPPVFDQIIEGTKWSVVNTTDDYASGLSSFYEIVVVAMGKMMSICLARNHHTDPSSSPFISALELEYLDDSVYNTTDFKNHALSLVARSSFGPEADVIGFPDDVFNRQWHPFLDEHPVVTSHVNITPSTFWNLPPTKVFYNGMTTSRGKSLKFNWPPFPLPEAYYYISLYFQDNRSPSLYSWRVFSVVINGKTFFSNLNVSANGVSVYSARWPLSGQTLLELIPADNMPVGPVISAGEILQVFRLTGRTLTRDVMAMEDLARSLNYPPHDWSGDPCLPKDHFWTGVTCSDGKLARVTTLNLTNFGISGTLPPSINNLTALSHLWLGNNKLSGIIPDIGSLKELRTLHLENNQFEGIIPHSLEKLPHIHEVFLQNNNNLKSKALEALQKLGIHIEL 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6844134 6848314 + CmoCh19G006250.1 Cmo19g00625 403785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00625 516 PANTHER OS07G0107800 PROTEIN-RELATED 15 508 - -
Cmo19g00625 516 Gene3D Ribonuclease Inhibitor 372 513 IPR032675 -
Cmo19g00625 516 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-KINASE-RELATED 15 508 - -
Cmo19g00625 516 Pfam Malectin-like domain 38 362 IPR024788 -
Cmo19g00625 516 Gene3D - 222 332 - -
Cmo19g00625 516 SUPERFAMILY L domain-like 379 501 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00625 - - - csv:101206117 844.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00625 Cmo-Chr19:6844134 Cmo18g00711 Cmo-Chr18:8942293 1.03E-52 dispersed
Cmo19g00625 Cmo-Chr19:6844134 Cmo08g01131 Cmo-Chr8:7224396 2.40E-144 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g421 . . . . . . . . Cmo19g00625 . . . . . Sed05g2434 . Cpe15g00491 Bhi05g01125 Tan02g0904 Cmetu01g2340 . Hepe02g0582 . . Cla02g00596 Cam02g0625 Cec02g0625 Cco02g0640 Clacu02g0629 Cmu02g0625 Cre02g0949 Cone12ag1096 . . . . Csa07g00765 . Cme01g00044 Blo04g00489 . . Bda14g00519 . . Bma03g00519 . . . . . Cma19g00607 . Car19g00461 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009605 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 3 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00625 Cmo_Chr19 FPKM 25.141552 22.199179 15.062701 9.592999 20.051857 11.57457 17.281067 7.108974 10.089292 10.115312