Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00628 ATGTATGAGTTGACTTACGACCCAAAGGTGGCTGACCCACATGAGCCGGCTCACTACACAAGAGTGGGCGACCCATGTGGCTATTGGCATGGAGTTAGCTTGAACTTCTCTCTCAAGTCCTGTCATGATCGTGCACTCGACGAAAGAGATTTACAAGCGACATTACCCTTCTTAACTCACGCGATATTGTTGGATCGGGCTTTAGCCCATTATCTAAGATTCTGCACTATTATCTCCCATGGAAGTCTGAGCCGTGTCTCAGTTCCAATATGGCTGATCATTCGAAAAGACCAGCTGAATATCATTGGCTTAGTCAACCTTTACTTGACCAACGACCTAATACTAGAGCTCTTTGTAGTGGCGCTCGAAATTCTCTCGAGAGAGCCCATCACCAGAAAAATCGAAGGGAACAAGCTTCAGTTCCGCGACAGAAATCTACAACGGAAAATGGTGGAATCGAACTTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGGAGAGCTTAATCTCAACAAGCTAGCCGATGCTCTGAAATCTTCCAGCCCTAAATCCTCTCCGACGAAGCAGCTAAAGCGTCCTCGTCAGCCACTCGATATCTCGTCCTTCAGTGTGAGAAGATCCAGCCGTTTTGCGGATAAGCCCCCTCCAAGCTATAAGGAGGAGCCCATTGAACCACTTGCAGGTTTAAGAAGGACTTATCAAAGGAGGGATTTGTTGAATCGGGTTTATGCTTCAGATGTGGAAAGGCAATATGCCATTGACAGAGCACGAGACCTTCAATCTAGCCTAGAATCTAGATACCCAAGTTTTGTGAAGCCCATGCTTCAATCACATGTCACCGGGGGATTTTGGCTGGGTCTCCCAGTTCATTTTTGCAAGGCACACCTTCCCCTTGAGGATGAAATGTTAACTCTGGTGGACGAGGATGAAAATGAGTTCCAAACAAAATACCTTGCCGAAAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCCATTGATCACCAGTTAGTAGATGGGGATACTTTGGTGTTTCAGTTAACTAAGCCGACTGAATTCAAGGTGTATATCATCAGGGCATACAATTTAGAAGACAAAGAAAACACCCATGAGGATTCTGATGTCACCCAATTGGAAAGTAATGGCAAAAGAAATACTGGATCAGGTAAAGGAGATAACGGCGAGGATTCAAATGTATCCCCTTTGGAAAAAAGTGGCAAAAAGGTTGCTAGATCATCGGGGCGTAAAACCAGGGCAAATAAATCTGAAGATAAAGCAGCTAACGGCGAGGATTCCGGTGTCTCCCAGTTGGAAACAAGTGGCAAAAGAACTACAAGATCAGCAAGTAAAGGGAAAAAGTAG 1383 45.48 MYELTYDPKVADPHEPAHYTRVGDPCGYWHGVSLNFSLKSCHDRALDERDLQATLPFLTHAILLDRALAHYLRFCTIISHGSLSRVSVPIWLIIRKDQLNIIGLVNLYLTNDLILELFVVALEILSREPITRKIEGNKLQFRDRNLQRKMVESNLTYEECRRQRLEENKKRMGELNLNKLADALKSSSPKSSPTKQLKRPRQPLDISSFSVRRSSRFADKPPPSYKEEPIEPLAGLRRTYQRRDLLNRVYASDVERQYAIDRARDLQSSLESRYPSFVKPMLQSHVTGGFWLGLPVHFCKAHLPLEDEMLTLVDEDENEFQTKYLAEKTGLSGGWRGFSIDHQLVDGDTLVFQLTKPTEFKVYIIRAYNLEDKENTHEDSDVTQLESNGKRNTGSGKGDNGEDSNVSPLEKSGKKVARSSGRKTRANKSEDKAANGEDSGVSQLETSGKRTTRSASKGKK 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6853976 6857816 - CmoCh19G006280.1 Cmo19g00628 403788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00628 460 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 151 378 IPR044837 -
Cmo19g00628 460 MobiDBLite consensus disorder prediction 386 407 - -
Cmo19g00628 460 SUPERFAMILY DNA-binding pseudobarrel domain 270 367 IPR015300 -
Cmo19g00628 460 MobiDBLite consensus disorder prediction 184 203 - -
Cmo19g00628 460 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 151 378 - -
Cmo19g00628 460 Pfam B3 DNA binding domain 277 367 IPR003340 GO:0003677
Cmo19g00628 460 MobiDBLite consensus disorder prediction 375 460 - -
Cmo19g00628 460 ProSiteProfiles B3 DNA-binding domain profile. 277 368 IPR003340 GO:0003677
Cmo19g00628 460 Gene3D - 253 369 IPR015300 -
Cmo19g00628 460 SMART B3_2 277 368 IPR003340 GO:0003677
Cmo19g00628 460 CDD B3_DNA 275 366 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00566 Cmo19g00628 CCT
Cmo02g00566 Cmo19g00628 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00566 Cmo-Chr2:3282669 Cmo19g00628 Cmo-Chr19:6853976 6.86E-35 dispersed
Cmo12g00469 Cmo-Chr12:2870352 Cmo19g00628 Cmo-Chr19:6853976 1.76E-63 dispersed
Cmo12g00470 Cmo-Chr12:2875151 Cmo19g00628 Cmo-Chr19:6853976 8.25E-61 dispersed
Cmo19g00628 Cmo-Chr19:6853976 Cmo09g00192 Cmo-Chr9:863015 3.48E-08 dispersed
Cmo11g01356 Cmo-Chr11:9429577 Cmo19g00628 Cmo-Chr19:6853976 4.66E-156 wgd
Cmo19g00628 Cmo-Chr19:6853976 Cmo04g00537 Cmo-Chr4:2671750 2.20E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11629 PF02362 B3 2.80E-15 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00628 - - cmax:111471078 581.637