Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00644 ATGAAGGAGTTTGATCAGGCCTTCATCCAAGCCCCAGAGCACCGCCCCAATCTCTCCGCCGTTGAATCCGACGGCATCCCCACCATCGACCTCTCTCCGATCTTCAACTCCCCCGACGGTACCTTCCCCGACGATTTGGTCCGACAAATCGCCTCTGCTTCCATAGACTGGGGATTCTTTCTTGTGGTCAACCACGGCGTCCCCGCCGAGAAGCGGCGGCGGATGGAGGCCGCTTCTCGGGAGTTTTTTGGGCGGAGTTTGGAAGAGAAGAGAACAGTGATGAAAGTGGAAGGGATGGTCACTGGCTATTCTGATATGGAGCTCACCAAGAACGTTAGAGATTGGAAGGAGGTCTTTGATTTCATTGTGGCCGATCCCACCGTCGTCCCCGTGTCGCCCGAGCCTGATGACCATCGGTTGACTCATTGGACCAATCGATGGCCGACATACCTGCCGAAATTCAGAGAGGCTGGTAAGGAATATGCGGAAGAACTAGAGAAACTTGGCCACAAGTTAGTAGAACTGATCGCGGTTAGCTTGGGATTACCAGCACAAAGGTTTCGAGATTATTTCAAGGAGAAAACAAGTATGGTGAGACTGAATCATTATCCTCCATGCTCGTTGCCAGAAATGGCTCTCGGTGTGGGTCGTCACAATGACCCCGGCGTCTTAACGATGCTTGCCCAAGACGACGTCGGGGGGCTAGAAGTGAAAAGGAAAAGAGATGGAGAGTGGATTCGGGTCAAACCCGTACCCGATTCTTACGTCGTCAATGTTGGCAACGTTACTCAGGTTTGGAGCAATGAGAGGTACGAGAGCGTGGAGCATAGGGTTATGGTAAACGACAAAAAGGAAAGATATTCCATTGCGTTCTTCTTCAACCCATCTCATTCCACCATTGTCGAACCTTTGGAAGAACTCATCGATCCCGAAAACCCTCCGAAATACCAATCGTACTTATGGGGGAAGCTTCTTTTTAATAAATGTGCAAGGCTTTCAAGAGACTTAAAGCTACAATATTCAAGTTTCTAA 1032 50.0 MKEFDQAFIQAPEHRPNLSAVESDGIPTIDLSPIFNSPDGTFPDDLVRQIASASIDWGFFLVVNHGVPAEKRRRMEAASREFFGRSLEEKRTVMKVEGMVTGYSDMELTKNVRDWKEVFDFIVADPTVVPVSPEPDDHRLTHWTNRWPTYLPKFREAGKEYAEELEKLGHKLVELIAVSLGLPAQRFRDYFKEKTSMVRLNHYPPCSLPEMALGVGRHNDPGVLTMLAQDDVGGLEVKRKRDGEWIRVKPVPDSYVVNVGNVTQVWSNERYESVEHRVMVNDKKERYSIAFFFNPSHSTIVEPLEELIDPENPPKYQSYLWGKLLFNKCARLSRDLKLQYSSF 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6965152 6966899 - CmoCh19G006440.1 Cmo19g00644 403804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00644 343 PRINTS Isopenicillin N synthase signature 50 67 - -
Cmo19g00644 343 PRINTS Isopenicillin N synthase signature 218 239 - -
Cmo19g00644 343 PRINTS Isopenicillin N synthase signature 283 301 - -
Cmo19g00644 343 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 2 326 - -
Cmo19g00644 343 Gene3D - 1 335 IPR027443 -
Cmo19g00644 343 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE, NON-HEME DIOXYGENASE DOMAIN-CONTAINING PROTEIN-RELATED 2 326 - -
Cmo19g00644 343 Pfam 2OG-Fe(II) oxygenase superfamily 196 295 IPR044861 -
Cmo19g00644 343 Pfam non-haem dioxygenase in morphine synthesis N-terminal 26 149 IPR026992 -
Cmo19g00644 343 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 194 295 IPR005123 -
Cmo19g00644 343 SUPERFAMILY Clavaminate synthase-like 4 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00644 - - - csv:101209423 516.153
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00644 Cmo-Chr19:6965152 Cmo06g01482 Cmo-Chr6:10677581 3.62E-57 dispersed
Cmo19g00644 Cmo-Chr19:6965152 Cmo19g00645 Cmo-Chr19:6976833 0 tandem
Cmo05g01371 Cmo-Chr5:10619084 Cmo19g00644 Cmo-Chr19:6965152 4.28E-33 transposed
Cmo16g01175 Cmo-Chr16:8367044 Cmo19g00644 Cmo-Chr19:6965152 1.17E-36 transposed
Cmo11g01335 Cmo-Chr11:9249777 Cmo19g00644 Cmo-Chr19:6965152 1.67E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g477 . . . . . . . . Cmo19g00644 . . . . . . . Cpe15g00508 Bhi05g01158 . . . Hepe06g0397 . . . . . . . . . . . . . . Csa07g00790 . . . . . Bda14g00528 . . . . . . . Cma11g01775 Cma19g00626 . Car19g00478 . . . . . . . . . . . . . . . . Lsi11g01036 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00644 Cmo_Chr19 FPKM 4.86014 3.136152 5.798674 5.872325 5.383753 8.045884 9.916842 6.960046 7.686349 7.545173