Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00645 ATGGACGATTTCGATCAAGCCTTCATCCAAGCCCCCGAGCACCGCCCCAAGCTCTCCGACGCCGAAGCCGACGGCATCCCCACCGTCGACCTCTCTCCGATCTTCAACTCCCCCGACGGTACCTTCCCCGATGATTTGGTCCGACAAATCGCCTCTGCTTCTGCAGACTGGGGATTCTTTTTTGTGGTCAACCACGGCGTCCCCCCCGAGAAGCAGCGCCGGATCGAGGCCGCTGCCCGGGAGTTTTTCGGGCAGAGTTTGGAAGAGAAGAGGAAAGTGAGGAGAGATGAAGGGGTAGTGACCGGCTACTCTAATACGGAGCTCACCAAGAATGTCAGAGATTGGAAGGAGGTGTTTGATTTCGTTGTGGCGGATCCCACCGTCGTTCCGGCGTCGCCGGAGCCTGATGATGACCAGTTGGCTAAGTGGACCAATAGATGGCCGGAATACCTGCCGGAATTCAGGAAGGCTTGCGAGGAATATGTTGAAGAACTGGAAAAGCTTGGCCACAAATTAATGGAATTGCTCGCCGTTAGCTTGGGATTACCGGCGGAGAGATTTCGAGATTATTTCAAAGAGACGACGAGTTTTGGGAGACTGAATCATTATCCGCCGTGCCCGTCGCCGGAGCTAGCTCTCGGCGTCGGCCGCCATAAGGACCCTGGCGTCTTGACGGTGCTTGCCCAAGACGACGACGTGGAAGGGCTGGAAGTGAAAAGGAAGAGAGATGGAGAGTGGATTCGGGTCAAACCCGTACCCGATTCGTACGTTGTCAATGTCGGAGAAATTACTCAGGCTTGGAGCAATGAGAGGTACGAGAGCGTGGAGCATAGAGCTATGGTTAACCACAAAAGGGAAAGATATTCCATTGCCTTCTTCTTCAACCCATCTCACTCCACCATTGTCGAGCCTTTGAAAGAACTCATCGATCCCGAAAACCCTCCCAAATACAAATCTTACTCATGGGGAAAGTACCTTTCGAATAGAATGCTCAGTAACTTTAAGAAACTGAATGTCGACAACATTCAAGTTTCTCACTTTAAGATCTCCAACTAG 1056 52.18 MDDFDQAFIQAPEHRPKLSDAEADGIPTVDLSPIFNSPDGTFPDDLVRQIASASADWGFFFVVNHGVPPEKQRRIEAAAREFFGQSLEEKRKVRRDEGVVTGYSNTELTKNVRDWKEVFDFVVADPTVVPASPEPDDDQLAKWTNRWPEYLPEFRKACEEYVEELEKLGHKLMELLAVSLGLPAERFRDYFKETTSFGRLNHYPPCPSPELALGVGRHKDPGVLTVLAQDDDVEGLEVKRKRDGEWIRVKPVPDSYVVNVGEITQAWSNERYESVEHRAMVNHKRERYSIAFFFNPSHSTIVEPLKELIDPENPPKYKSYSWGKYLSNRMLSNFKKLNVDNIQVSHFKISN 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6976833 6979634 - CmoCh19G006450.1 Cmo19g00645 403805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00645 351 Gene3D - 1 336 IPR027443 -
Cmo19g00645 351 SUPERFAMILY Clavaminate synthase-like 4 335 - -
Cmo19g00645 351 PRINTS Isopenicillin N synthase signature 50 67 - -
Cmo19g00645 351 PRINTS Isopenicillin N synthase signature 171 187 - -
Cmo19g00645 351 PRINTS Isopenicillin N synthase signature 284 302 - -
Cmo19g00645 351 PRINTS Isopenicillin N synthase signature 321 339 - -
Cmo19g00645 351 Pfam non-haem dioxygenase in morphine synthesis N-terminal 26 149 IPR026992 -
Cmo19g00645 351 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 193 296 IPR005123 -
Cmo19g00645 351 PANTHER DIRIGENT PROTEIN 3 341 - -
Cmo19g00645 351 Pfam 2OG-Fe(II) oxygenase superfamily 199 296 IPR044861 -
Cmo19g00645 351 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 3 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00645 - - - csv:101209423 578.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01335 Cmo-Chr11:9249777 Cmo19g00645 Cmo-Chr19:6976833 2.04E-137 dispersed
Cmo16g01175 Cmo-Chr16:8367044 Cmo19g00645 Cmo-Chr19:6976833 1.54E-36 dispersed
Cmo19g00645 Cmo-Chr19:6976833 Cmo06g01482 Cmo-Chr6:10677581 1.14E-58 dispersed
Cmo19g00644 Cmo-Chr19:6965152 Cmo19g00645 Cmo-Chr19:6976833 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g481 . . . . . . . . Cmo19g00645 . . . . . . . Cpe15g00509 Bhi05g01160 . . . . . . . . . . . . . . . . . . . . . . . . Bda14g00529 . . . . . . . . Cma19g00627 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00645 Cmo_Chr19 FPKM 3.784579 3.496165 11.649508 11.653115 47.342728 46.846119 46.547626 5.066533 5.044069 5.31661