Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00655 ATGGAGGAAATGGGCAATAGAAAGCAAGTTCTTGATGGGGATGTTCAGAATTCCTTGAAGCAGGAGATTCTACAGCTTCAAGAACAATTACAAAGCCAGTTCGTCATTCGCCACGCCTTGGAGAAGGCAATGAACTATCAGCCTCTCGCACTTCATTCCGCTACCGAAAACTCGATTCCGAAGGCTGAGATGGATCTGATTAAACAAATAGCCGTCTTGGAGTTAGAAGTCGTTTATTTGGAAAAGTACCTCCTGTCGTTATACCGACGAACTTTCGAGCAACAAGTATCCTCTTTTTCTACCATGGATGATAGCCAAGAATCATTTGGCAATCGATGTAAAGAACCAAATGAAGTTGAGGAACCGGAGAAGTCGTTACACGTTCATCGCAGCTACTCGTCTCTTTCGCAGAGATCGCCCGGTTCATCTCGAAGCTATCCGTTATCAAAGTATATGGCTAAAGCAGTAGATTCATACCATTCCCTTCCATTATCAATGCTGGAGCAATCTCGAGTTGATGCTTCGAATTCTACGAGTCTCGGGGAGCACCTCGGGGCCTGGATATCGGATCGAGCAGACGAGTCGCCTAACTGGATTGCTGAGGAGATGATCAAGTCCATCTCTGCAATATACCGCGAACTTACCGAACCTCCTTCGACGAATCATAGGAATCGTTCTCCTATCTCACCGTTGTCATCCATGTACGAACTTTCTTCACAAGACTTGTGCAGTACAAGGAACTACGAAAAGTCGTTTAACTCGAATTTCGAGAACTCGTTTCACACCGGAGAATTTAGTGCACCGTATGACACGATGTTGAAGGTGCAATGGCTTTCTAGAGAAAGAATGAAGGACTTAGATATCAACCACATGCTACAAGGCTTCAGGTCACTTACTTCTCGGCTCAAAGATGTCGATCTCAAAGTCATGAAACACGACGAAAAACTCGCGTTTTGGATTAATGTACACAACACGCTCGTAATGCATGCTTATTTGCAATATGGTATCCCCAAGAACAGTTTAAAGACATTGATACTCAAGGCCGCGTATAATGTTGGGGGACACATAATAAGTGTCGATATGATACAAAGCTCGATTCTCGGGTGTCGTTTGCCTCGTCCGGGACAGTGGCTGCACTTGTTCCTCTCGTCGAAAACGAAACTTAAGGTCAATGATGCACAGAAATCCTTTCGAATCAACCTCCCCGAACCTCGGTTATACTTCGCTCTATGTTGCGGGAGCCATTCCGATCCAGCAGTTCGTGTCTATACGGCGAAGAGGCTGAACGAGGAGTTGGAGGTTGCAAAAGAAGACTACATCCTTTCGAATTTGAGGACACACAAAGGGCAGAGAATTCTACTTCCCAAGATTGTTGAGTCCTTTGCCAAGGATTCTGGCTTATGCGTGGAAGATTTGGAGGACATTGTCGGGCGTCTAAGGCTCGACGGGCGGATAAACGACAGTCGGCAGCTGCAACGAAAGAAGTTGTGGAAGAGTATTGGAAGAAACCCTAATCCGCCATTTTTGTTCCTCGAAAACCCTCTCGGAGGGTTTGGTTTGGTGTGGGGAGAGATGGAAGTACAAAGCACGGCTATAATTTTAGCAAGAGCGACAGAGCTGAGGCTGAAGATTAGAAGCTCTGTTAACACCACCACCACGAGTTCGGCGGTAATTTCCTTGGAGAATCGGGATGATCGGTTCGCCGTGGATGAAAATAATGGCGTTGGTTCGCGGCGGAGTGAGGCCGACGCGATTGAGGTAACGGAAGAAGACGAGGAAGAGGTGAGGCTTTTGAATATCTGCGGTGCGCTCGAGTCTCTTGAGAATCAACTCTCTTCGTTGCAGGATTTACAACAACGGCAAAGGTACGAGAAGGAAGTAGCCCTTTCCGAGATCGAGCATAGCCGCGAGATGTTACTGGATAAGCTGAAGAAGTACGAAGGAGAGGATTTGGAAGTGATACACGAGGCGTCAGCTTTTGTTGGGGAGACCGTGCAGCACAACCAGGATCTCATGCTTCCTCCATATCCAAGCCATCCTGGTAATGGCTACTTACATCCCTTCCCTTCTGCACTCAAGTTTGTGAGCGCTGCTACAAATAAAGCTACTAAGGAACTTAACGAATCAGAACGGAAACACTCGAAATTGGATTCGAGGAACTCGAGGAATAGATTAGGATCCTTCATTAGTATAGCTGCAAAATCCGTGGTTACCATTGTTGGCATAGTATCCCTACTGCACTTGGCTGGTTTTCGACCGAAGTTTGCAGCGAAAATTGCTGCTTTGAAGGCTTTGGACCGTTTTCGACGGTCTGCAGCTGTAAATAATGAATCACGCCATGGATGCCCTCCGGGTAAGTTCCTCGTGATGGAAAACGGGAAAGCTCGATGCGTCGTGAAAGAGAGAATCGAAGTTCCGTTTTCTTCGGTTGTGGCTAAACCAGATGTAAACTATGGAAGCGGGTAA 2466 46.67 MEEMGNRKQVLDGDVQNSLKQEILQLQEQLQSQFVIRHALEKAMNYQPLALHSATENSIPKAEMDLIKQIAVLELEVVYLEKYLLSLYRRTFEQQVSSFSTMDDSQESFGNRCKEPNEVEEPEKSLHVHRSYSSLSQRSPGSSRSYPLSKYMAKAVDSYHSLPLSMLEQSRVDASNSTSLGEHLGAWISDRADESPNWIAEEMIKSISAIYRELTEPPSTNHRNRSPISPLSSMYELSSQDLCSTRNYEKSFNSNFENSFHTGEFSAPYDTMLKVQWLSRERMKDLDINHMLQGFRSLTSRLKDVDLKVMKHDEKLAFWINVHNTLVMHAYLQYGIPKNSLKTLILKAAYNVGGHIISVDMIQSSILGCRLPRPGQWLHLFLSSKTKLKVNDAQKSFRINLPEPRLYFALCCGSHSDPAVRVYTAKRLNEELEVAKEDYILSNLRTHKGQRILLPKIVESFAKDSGLCVEDLEDIVGRLRLDGRINDSRQLQRKKLWKSIGRNPNPPFLFLENPLGGFGLVWGEMEVQSTAIILARATELRLKIRSSVNTTTTSSAVISLENRDDRFAVDENNGVGSRRSEADAIEVTEEDEEEVRLLNICGALESLENQLSSLQDLQQRQRYEKEVALSEIEHSREMLLDKLKKYEGEDLEVIHEASAFVGETVQHNQDLMLPPYPSHPGNGYLHPFPSALKFVSAATNKATKELNESERKHSKLDSRNSRNRLGSFISIAAKSVVTIVGIVSLLHLAGFRPKFAAKIAALKALDRFRRSAAVNNESRHGCPPGKFLVMENGKARCVVKERIEVPFSSVVAKPDVNYGSG 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7045313 7054052 + CmoCh19G006550.1 Cmo19g00655 403815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00655 821 Coils Coil 604 624 - -
Cmo19g00655 821 Pfam Leucine-zipper of ternary complex factor MIP1 15 94 IPR025757 -
Cmo19g00655 821 PANTHER UNCHARACTERIZED 102 501 - -
Cmo19g00655 821 PANTHER UNCHARACTERIZED 6 100 - -
Cmo19g00655 821 Coils Coil 699 719 - -
Cmo19g00655 821 PANTHER TERNARY COMPLEX FACTOR MIP1 LEUCINE-ZIPPER PROTEIN 102 501 - -
Cmo19g00655 821 PANTHER TERNARY COMPLEX FACTOR MIP1 LEUCINE-ZIPPER PROTEIN 6 100 - -
Cmo19g00655 821 MobiDBLite consensus disorder prediction 103 146 - -
Cmo19g00655 821 Coils Coil 629 649 - -
Cmo19g00655 821 Pfam Protein of unknown function, DUF547 309 440 IPR006869 -
Cmo19g00655 821 MobiDBLite consensus disorder prediction 129 146 - -
Cmo19g00655 821 MobiDBLite consensus disorder prediction 108 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00655 - - - csv:101203131 737.258
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo19g00655 Cmo20g00876 CCT
Cmo11g01327 Cmo19g00655 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01027 Cmo-Chr3:7692664 Cmo19g00655 Cmo-Chr19:7045313 5.03E-89 dispersed
Cmo07g00762 Cmo-Chr7:3436504 Cmo19g00655 Cmo-Chr19:7045313 2.01E-128 dispersed
Cmo15g01175 Cmo-Chr15:8183266 Cmo19g00655 Cmo-Chr19:7045313 8.34E-52 dispersed
Cmo18g01324 Cmo-Chr18:12607740 Cmo19g00655 Cmo-Chr19:7045313 1.70E-08 dispersed
Cmo19g00655 Cmo-Chr19:7045313 Cmo20g00876 Cmo-Chr20:4423800 1.78E-75 dispersed
Cmo11g01327 Cmo-Chr11:9163720 Cmo19g00655 Cmo-Chr19:7045313 1.72E-111 wgd
Cmo19g00655 Cmo-Chr19:7045313 Cmo02g00420 Cmo-Chr2:2199078 1.48E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g542 Blo02g00793 Blo15g00712 . Bda08g00903 Bpe07g00413 . . Bma12g00495 Cmo19g00655 Cmo11g01327 . Cma20g00866 . . Sed01g0313 Cpe04g00254 Cpe15g00518 Bhi05g01178 Tan02g0851 Cmetu11g2117 . Hepe02g0547 . . Cla02g00556 Cam02g0582 Cec02g0584 Cco02g0594 Clacu02g0581 Cmu02g0578 Cre02g0908 . . . Cone10ag1147 . . . Cme01g00007 . . . . . . . . Sed05g3633 . Cmo20g00876 Cma11g01782 Cma19g00642 Car11g01069 . . . Bhi10g02039 Tan05g1340 Cmetu11g1828 . . . . . . . . . . . Lsi11g01054 . Chy01g00008 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009608 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00655 Cmo_Chr19 FPKM 16.869047 19.589096 16.054064 16.931803 23.004782 22.997423 23.873901 14.820098 12.564299 14.201019