Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00657 ATGGAGGGTACCTGCAGTTCTCTGCGGTCACCGGCTTTAACCATAGCGCCCTCCTCTTTGTCTAGAAGTGGGTTCTCAGAGAAGCCATTGTTGCCTGCTCGAGCTGTGAAACTATCGAAGAACAAGAGATACCCACTTGCTCGAAGCCTCAAATTTCTTCCCATTACAGCTCAAGCTTCGAGCACAAGTAGTTTTAGCTCAGAGGCAGCTCCGGCAATTTCAAAGAAGGAAGGTTCAAAAGATGAGGATCTTGTATTTGTTGCTGGTGCTACAGGAAGAGTTGGTTCAAGAACCGTGAGGGAGCTTTTGAAACTTGGATTCCGTGTAAGAGCCGGTGTAAGGAGTTCTCAGAAAGCCGAAACTCTTGTTGAGAGTGTTAAAAAGATGAAGCTTGATGAAGCTGTAGAAAAGCTTGAAACTGTGGTATGTGACTTGGAGAGACCAAATCAGATTGGACCCGCAATAGGGAATGCATCGATAGTTATTTGCTGCATTGGTGCAAGTGAGAAGGAGATTTTTGATATCTCTGGACCTTATCGAATCGACTATATGGCTACCAAAAACTTGGTTGAAGCAGCAACCGTTGCAAAAGTGAAGCATTTCGTTCTGCTTACGTCCCTCGGAACCAACAAGATTGGATTTCCTGCTGCCATTCTCAACTTGTTTTGGGGAGTCCTGTTATGGAAAAGGAAGGCAGAAGAAGCATTGATTGCAAGTGGTCTTCCTTATACAATAGTGAGACCTGGGGGCATGGAGAGGCCTACAGATACTTTCAAGGAAACTCATAACACTACTGTTTCGCCCGAAGATACTTTGTTTGGTGGTCTGGTGTCGAATCTTCAGGTTTCAGAGCTCATGGCATGCATAGCAAAAAATCCTGGTCTCTCATGCTATAAAGTGATAGAAGTAATTGCCGAGACAACTGCACCATTGACTCCCCTAGAGGATCTTCTTACAAAAATACCATCTAAAAAGGAATATAGCGCTGCACGCATTGTCGATCCACCACCTCCTGAGAGCGTTTCATCAGAACCGTCGAGTATTGTCAAAGAAAAGGAATCAGCTGAAGCAAAGGCACCCACTCAAAGGGTTTCATCAGAACAGTTGAACATTGCAAAAGAGAAGGAATCAGCTGTAGCAAATGTTACAAAACAGTCATCATCACCCTACATTTCGTACGAGGATTTAAAACCTCCAACATCACCTACTCCATCTGCACCTGTTGGGATCGTCGACGGAGTCCCATCGATAGCTCAAACGAGTTCATCAGAATCGTCAACTGAAATTGCTGAGGCAAAACCTGCACCTGCTCCTGAAAAAGCAGTGACACCTCTCTCCCCTTATGTAGCATATGAAGATCTAAAGCCTCCTACATCACCATCTCCTAGTGCACCTTCCCTATCATTTTCGTCAACATCTCCCTCAAACGGTCCACCTCAGCCTGCTACCGCGAACGTAAACAGCTCAACACCGATTCCAGAGGCAGACGTCTCGAGTGAAACACATCTTCCCAAGCCGAAGAAGCTACAACCACTGTCACCTTTCACCATGTACGAGGATTTGAAGCCTCCAGCATCCCCAACGCCCTCTCCTTGA 1596 45.86 MEGTCSSLRSPALTIAPSSLSRSGFSEKPLLPARAVKLSKNKRYPLARSLKFLPITAQASSTSSFSSEAAPAISKKEGSKDEDLVFVAGATGRVGSRTVRELLKLGFRVRAGVRSSQKAETLVESVKKMKLDEAVEKLETVVCDLERPNQIGPAIGNASIVICCIGASEKEIFDISGPYRIDYMATKNLVEAATVAKVKHFVLLTSLGTNKIGFPAAILNLFWGVLLWKRKAEEALIASGLPYTIVRPGGMERPTDTFKETHNTTVSPEDTLFGGLVSNLQVSELMACIAKNPGLSCYKVIEVIAETTAPLTPLEDLLTKIPSKKEYSAARIVDPPPPESVSSEPSSIVKEKESAEAKAPTQRVSSEQLNIAKEKESAVANVTKQSSSPYISYEDLKPPTSPTPSAPVGIVDGVPSIAQTSSSESSTEIAEAKPAPAPEKAVTPLSPYVAYEDLKPPTSPSPSAPSLSFSSTSPSNGPPQPATANVNSSTPIPEADVSSETHLPKPKKLQPLSPFTMYEDLKPPASPTPSP 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7073158 7081270 - CmoCh19G006570.1 Cmo19g00657 403817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00657 531 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 85 294 IPR036291 -
Cmo19g00657 531 Pfam NAD(P)H-binding 89 293 IPR016040 -
Cmo19g00657 531 MobiDBLite consensus disorder prediction 415 429 - -
Cmo19g00657 531 MobiDBLite consensus disorder prediction 464 496 - -
Cmo19g00657 531 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 338 530 IPR044719 -
Cmo19g00657 531 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 6 473 IPR044719 -
Cmo19g00657 531 CDD SDR_a5 85 307 - -
Cmo19g00657 531 Gene3D - 81 324 - -
Cmo19g00657 531 MobiDBLite consensus disorder prediction 390 531 - -
Cmo19g00657 531 MobiDBLite consensus disorder prediction 329 368 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00657 - - - cmo:103495191 751.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00778 Cmo-Chr2:4838010 Cmo19g00657 Cmo-Chr19:7073158 3.65E-16 dispersed
Cmo03g01382 Cmo-Chr3:10129129 Cmo19g00657 Cmo-Chr19:7073158 1.53E-29 dispersed
Cmo07g01045 Cmo-Chr7:5310206 Cmo19g00657 Cmo-Chr19:7073158 6.81E-15 dispersed
Cmo11g00877 Cmo-Chr11:4494433 Cmo19g00657 Cmo-Chr19:7073158 7.23E-18 dispersed
Cmo14g01686 Cmo-Chr14:13241263 Cmo19g00657 Cmo-Chr19:7073158 7.11E-09 dispersed
Cmo19g00657 Cmo-Chr19:7073158 Cmo07g00117 Cmo-Chr7:655383 5.83E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g547 . . . . . . . . Cmo19g00657 . . . . . . . Cpe15g00520 . . . . . . . . . . . . . . . Cone8ag1176 . . . Csa07g00822 . . . . . Bda14g00535 . . Bma03g00535 . . . . . . . Car19g00490 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002707 3 2 3 1 1 2 1 1 2 2 1 2 1 2 2 2 2 2 2 1 2 2 2 2 1 2 1 4 4 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00657 Cmo_Chr19 FPKM 0.187919 0.0 0.0 0.0 0.202996 0.0 0.0 0.0 0.0 0.0