Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00660 ATGTGGATGACGCCGGTCCGCAGTCGAAGCTCGAAAGCGAAGGGATCCGAATTTGGCCCTGCGGAACGAACAATGATTAAGCTTTTTAAAGTGAAGGAAAAGCAGAGAGAGATTGCACGGAATGCCAATGGAAAACCTCCTGGCAAGAAGCAAAGTGCAGGAGAATTGCGTCTTCAAAAAGATATCAGTGAATTGAACCTACCAAAAACGTGTTGTATATCGTTTCCTAATGGCAAGGATGACTTGATGAACTTTGAGGTCACTATTCAGCCTGATGAAGGATATTATCTAGGCGGCACGTTTCTCTTCTCTTTCCAAGTTTCCCCTGTGTACCCTCACGAGCCACCAAAAGTTAAGTGCAAGACAAAGGTGTATCATCCTAATATTGACTTGGAAGGAAATGTTTGTCTCAACATTTTAAGAGAGGACTGGAAGCCCGTTCTGAATATCAACACTATCATATACGGATTATTTCATCTTTTCACGCAACCAAATCATGAAGACCCCCTCAACCACGATGCTGCAGCTGTTTTAAGGGATAACCCGAAGACGTTCGAATCCAACGTGAGAAGAGCAATGGCTGGGGGATATTATTGGTTTCCATGGAAGTTGGACTGGAAACTGAAACACTTATCTCTGTCAAAGAAGCGCGATGGAGCGGTTGTCGACATTCCTTCATTGACCGACTTTTCGACCCTTTTAGCTCCCATGGTGGCAGGCAGCCGTTGTCATGGGAGTGAAGAAACAATGAAGACGTTGAGACTTATGATTGATGTATTGAGATCGATGTGA 792 44.32 MWMTPVRSRSSKAKGSEFGPAERTMIKLFKVKEKQREIARNANGKPPGKKQSAGELRLQKDISELNLPKTCCISFPNGKDDLMNFEVTIQPDEGYYLGGTFLFSFQVSPVYPHEPPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNHEDPLNHDAAAVLRDNPKTFESNVRRAMAGGYYWFPWKLDWKLKHLSLSKKRDGAVVDIPSLTDFSTLLAPMVAGSRCHGSEETMKTLRLMIDVLRSM 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7096803 7100615 + CmoCh19G006600.1 Cmo19g00660 403820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00660 263 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 53 198 IPR000608 -
Cmo19g00660 263 SUPERFAMILY UBC-like 45 200 IPR016135 -
Cmo19g00660 263 Gene3D Ubiquitin Conjugating Enzyme 49 198 IPR016135 -
Cmo19g00660 263 CDD UBCc 57 191 IPR000608 -
Cmo19g00660 263 SMART ubc_7 56 198 - -
Cmo19g00660 263 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 125 140 IPR023313 -
Cmo19g00660 263 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 37 197 - -
Cmo19g00660 263 PANTHER - 37 197 - -
Cmo19g00660 263 Pfam Ubiquitin-conjugating enzyme 57 192 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00660 K10579 UBE2M, UBC12; ubiquitin-conjugating enzyme E2 M [EC:2.3.2.34] - csv:101214340 345.125
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01317 Cmo19g00660 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00660 Cmo-Chr19:7096803 Cmo01g00967 Cmo-Chr1:6176573 1.09E-27 dispersed
Cmo11g01317 Cmo-Chr11:9107359 Cmo19g00660 Cmo-Chr19:7096803 3.65E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g555 . . . . . . . . Cmo19g00660 Cmo11g01317 . . . . . Cpe04g00246 Cpe15g00523 Bhi05g01195 . . . . . . Cla02g00546 Cam02g0569 Cec02g0572 Cco02g0583 Clacu02g0570 Cmu02g0566 Cre02g0897 Cone12ag1136 Cone8ag1183 Cone3ag1141 Cone10ag1152 . . . Cme01g01472 . . . . . . . . . . . Cma11g01736 Cma19g00649 Car11g01061 Car19g00493 . . . . . . . . . . . . . . . . Lsi11g01069 . Chy01g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001287 3 4 1 2 2 2 4 2 2 2 2 2 4 1 2 3 2 4 4 2 2 2 2 2 2 1 2 4 6 3 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00660 Cmo_Chr19 FPKM 27.246817 31.002878 29.726595 31.36055 37.174026 32.610512 37.204342 49.794361 48.32793 50.858845