Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00661 ATGAAGCATCTGAAACATGGGTTACTATGCCATGTCCAAGCCATCAAATCCGGGTTTACGCCCACCATTTTCACGTCGAATCAACTCATAAGTTTGTATGCGAAACATGGTCTTCTTGGCGATGCCCACAAAGTGTTCGACGAAATGCCTGAACGGAATGTCTTCTCATGGAATGCGATAATTGCAGCGTATATCAAGTCTCAGAACTTGAGAAAAGCGCGGGAATTATTTGACTCCGCTCATTATAGAGATTTGGTTACTTACAACTCAATGTTGTCTGGTTATGTTAGCTCCGATGGGTATGAGGCTCAAGCACTAGGGCTTTTTGTAGAAATGCAAACAGCCTCTGATATGATTAGAATTGATGAGTTTAGTCTTACAATCATGCTTAATTTAACTGCTAAGTTATGTGTGCTGTCTTATGGTAAACAGTTACATACCTTTATGTTGAAGACTGCTAATGATTTAAGTGTTTTTGCTGCTAGTTCCTTAATTGATATGTACTCTAAGTGTGGATGTTTTAAAGAAGCTTGTAGAGTTTATGATGGATGTGGTGAGGTTATTGATTTGGTCTCTAGAAATGCCATGGTAGCAGCTTGTTGTAGAGCAGGGGAGATAGATTTGGCTGTGGATCTTTTCTCGAGGGAACGGGATCGAAATGATGTTGTAGCATGGAACACGATGATATCGGGTTTTGTTCAGAACGGTTACGACAAAGAGTCATTAAAGTTATTCGTTAATACGGCAGATGAAAATGTTAGGTGGAATGAACACACTTTTGCAAGTGTCTTGAGTGCTTGCTCCAATCTAAAGAGCTTGAAGCTTGGAAAGGAAATCCATGCTTATGTTTTGAAGAATGGGCTGATTGTTAATCCCTTCATTGGCAGTGGCGTTGTTGATGTTTACTGCAAGTGCAATAACATGAGGTATGCCGAGTCGGTTCATTTGGAATTGACAACACGAAATGTATACTCGATCACTTCAATGATTGTTGGCTATTCTTCTCAAGGTAACATGGTAGAAGCCAGAAAGCTTTTTGATTCCTTGGATGAAAAGAATTCTGTCGTGTGGACTGCTTTATTTACTGAATATGTCAAATCACAACAATTTGAAGCAGTTTTTGAACTTTTAAGTGAATATAGGAAGGAGGCAGCTGTTCCTGATGTGCTGATTCTTGTCAGCATAATTGGTGCTTGTGCTAGACAAGCTGCTCTGGCTCCCGGGAAGCAGATACATGGTTACATGCTCCGAGCAGGCATCGAATTCGACGTGAAACTAGCCAGTTCATTGGTTGATATGTACTCAAAATGTGGAAGTATCATTTATGCAGAAAGAATTTTCAGAGAAGTTCTTGACAAGGATTCTATTCTTTACAACATTATGATAGCTGGCTATGCTCACCATGGGTGGGAAAATGAAGCAGTTCATCTTTTCAAGGAAATGATGGAAAACGATCTCGAACCAGATGCAATCACTTTCATTGCACTACTTTCTGCGTGTCGACACAGCGGTTTAGTCGAACTAGGTGAGCGTTTTTTCAACTCTATGACTAATGATTACAATATTAGTCCCGAAATCGATCATTATGCTTGTATGATCGATTTGTATGGAAGGGCTAATGAACTAGACAAGGCATTGGCATTCATGAAAAGGATTCCCATAGAGTTAGATGCTGTCATATGGGGAGCATTTCTGAATGCTTGTAGGATCAATGGGAATACTGAACTTGCTAGAGAAGCAGAAGACGAACTGTTGATGATCGAAGGAGAAAACAGCGCTCGATACGTGCAGTTAGCGAATGTTTATGCTGCAAAAGGGAATTGGGAGGAGATGGGGCGAATAAGGAAGAAGATGAAAGGAAAGGATGTTAAGAAGAATGCTGGTTTTAGTTGGGAAGCCATGAATGTTCGCAGAGACGGGGCGTTGATGAGAAACTCCTCGCAAGGATCCATTTTCTGCAAATCGAAGGTCGGGACTGCCATATTTATCGGCGTCCTTCTTGGATTCGTTTTTGCGTTCTTGTTCCCTGCTGGGATCTTCAAATCGAGCGCTCTCTCAGTTCGTGATTCTCGCTCCGTCAAATTCATAACCCAGGCCGATTCGAATTCGTGCGATTCATCTGAACGGATCGACATGTTAAAATCCGAGTTTATATCAGCATCTGAGAAGAATGCTCAGCTGGAGAAACAGATCAGGGAATTGACGGAGAAGCTTAAGTTAGCTGAGCAAGGTAAAGATCATGCACAGAAGCAAGTTCTTGCTTTAGGTAAACAGTCGAAAGCCGGGCCATTCGGAACGGTTAAAGCTGTAAGAACAAATCCACCAGTTATCCCTGATCAGTCTGTCAATCCAAGATTAGCAAATATATTGGAGAAAGTTGCTGTTAATCGAGAGCTTATAGTCGCGGTAGCGAATTCAAATGTGAAGGCGATGTTGGAACTATGGTTTACTACCATCAAGAAAGCAGGAATACCTAATTATCTTGTGGTTGCTTTGGATGATGAAATTGTTCAATTCTGTAAAACAAATGATGTTCCAGTTTATAAAAGAGACCCTGATGAAAAAGTTGATTCAATTGGAAGAACAGGAGGGAACCATGCCGTTTCGGGGACGAAATTCAGTATTTTGAGGGAGTTTCTGCAGTTAGGATATGGTGTTTTACTATCTGATGTCGATATTGTTTACTTGCAAAATCCTTTCGATCATCTTTATCGGGATTCGGATGTCGAATCCATGACCGATGGTCATGACAATGCAACTGCTTATGGATACAACCATGTCTTTGAGGAACCTTCAATGGGTTGGGCTCGATTCGCGCACACAATGCGAATCTGGGTTTATAACTCAGGCTTCTTCTATATTCGACCAACTATTCCTGCAATTGAGCTTTTAGATCGTGTGGCTAAACGTCTTTCTCAAGAACGTAACTCATGGGACCAGGCTGTTTTCAATGAGGAACTGTTTTTCCCTTCGCATTCGAACTACGAGGGGCTTTACGCTTCGAGAAGAACTATGGATTTCTATCTTTTTATGAATAGCAAGGTTCTATTCAAGACTGTAAGGAAGGATGATAATCTGAAAAAGTTGAAGCCAGTCATTGTTCATGTGAATTACCATCCCGATAAGTTTCCTCGAATGAAAGCCGTGGTCGACTTCTACGTCAACGGGAAGCAGGATGCTCTGAACCCGTTCCCTGACGGCTCGGATTGGGTCACTCGTTTAGCATATTGA 3231 41.47 MKHLKHGLLCHVQAIKSGFTPTIFTSNQLISLYAKHGLLGDAHKVFDEMPERNVFSWNAIIAAYIKSQNLRKARELFDSAHYRDLVTYNSMLSGYVSSDGYEAQALGLFVEMQTASDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFMLKTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAVDLFSRERDRNDVVAWNTMISGFVQNGYDKESLKLFVNTADENVRWNEHTFASVLSACSNLKSLKLGKEIHAYVLKNGLIVNPFIGSGVVDVYCKCNNMRYAESVHLELTTRNVYSITSMIVGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEYRKEAAVPDVLILVSIIGACARQAALAPGKQIHGYMLRAGIEFDVKLASSLVDMYSKCGSIIYAERIFREVLDKDSILYNIMIAGYAHHGWENEAVHLFKEMMENDLEPDAITFIALLSACRHSGLVELGERFFNSMTNDYNISPEIDHYACMIDLYGRANELDKALAFMKRIPIELDAVIWGAFLNACRINGNTELAREAEDELLMIEGENSARYVQLANVYAAKGNWEEMGRIRKKMKGKDVKKNAGFSWEAMNVRRDGALMRNSSQGSIFCKSKVGTAIFIGVLLGFVFAFLFPAGIFKSSALSVRDSRSVKFITQADSNSCDSSERIDMLKSEFISASEKNAQLEKQIRELTEKLKLAEQGKDHAQKQVLALGKQSKAGPFGTVKAVRTNPPVIPDQSVNPRLANILEKVAVNRELIVAVANSNVKAMLELWFTTIKKAGIPNYLVVALDDEIVQFCKTNDVPVYKRDPDEKVDSIGRTGGNHAVSGTKFSILREFLQLGYGVLLSDVDIVYLQNPFDHLYRDSDVESMTDGHDNATAYGYNHVFEEPSMGWARFAHTMRIWVYNSGFFYIRPTIPAIELLDRVAKRLSQERNSWDQAVFNEELFFPSHSNYEGLYASRRTMDFYLFMNSKVLFKTVRKDDNLKKLKPVIVHVNYHPDKFPRMKAVVDFYVNGKQDALNPFPDGSDWVTRLAY 1076
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7102099 7108101 - CmoCh19G006610.1 Cmo19g00661 403821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00661 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 224 IPR002885 -
Cmo19g00661 1076 PANTHER GLYCOSYLTRANSFERASE 647 1070 - -
Cmo19g00661 1076 Gene3D Tetratricopeptide repeat domain 405 519 IPR011990 GO:0005515
Cmo19g00661 1076 Gene3D Tetratricopeptide repeat domain 520 656 IPR011990 GO:0005515
Cmo19g00661 1076 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Cmo19g00661 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Cmo19g00661 1076 Pfam PPR repeat family 453 500 IPR002885 -
Cmo19g00661 1076 Gene3D Tetratricopeptide repeat domain 284 404 IPR011990 GO:0005515
Cmo19g00661 1076 Gene3D Tetratricopeptide repeat domain 138 283 IPR011990 GO:0005515
Cmo19g00661 1076 Coils Coil 710 751 - -
Cmo19g00661 1076 Pfam Nucleotide-diphospho-sugar transferase 824 1042 IPR005069 -
Cmo19g00661 1076 Pfam E motif 573 631 IPR046848 -
Cmo19g00661 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 115 IPR002885 -
Cmo19g00661 1076 TIGRFAM PPR: pentatricopeptide repeat domain 27 54 IPR002885 -
Cmo19g00661 1076 TIGRFAM PPR: pentatricopeptide repeat domain 324 355 IPR002885 -
Cmo19g00661 1076 TIGRFAM PPR: pentatricopeptide repeat domain 55 79 IPR002885 -
Cmo19g00661 1076 TIGRFAM PPR: pentatricopeptide repeat domain 457 490 IPR002885 -
Cmo19g00661 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Cmo19g00661 1076 Pfam PPR repeat 162 182 IPR002885 -
Cmo19g00661 1076 Pfam PPR repeat 86 113 IPR002885 -
Cmo19g00661 1076 Pfam PPR repeat 529 551 IPR002885 -
Cmo19g00661 1076 Pfam PPR repeat 25 54 IPR002885 -
Cmo19g00661 1076 Pfam PPR repeat 223 245 IPR002885 -
Cmo19g00661 1076 Pfam PPR repeat 327 353 IPR002885 -
Cmo19g00661 1076 Pfam PPR repeat 55 78 IPR002885 -
Cmo19g00661 1076 Pfam PPR repeat 191 214 IPR002885 -
Cmo19g00661 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Cmo19g00661 1076 SUPERFAMILY Nucleotide-diphospho-sugar transferases 800 1009 IPR029044 -
Cmo19g00661 1076 PANTHER ARABINOSYLTRANSFERASE RRA3 647 1070 IPR044290 GO:0016757|GO:0080147
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00661 - - - cpep:111776408 1249.57
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00372 Cmo19g00661 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00166 Cmo-Chr9:744605 Cmo19g00661 Cmo-Chr19:7102099 0 dispersed
Cmo19g00661 Cmo-Chr19:7102099 Cmo18g01100 Cmo-Chr18:11463142 2.95E-13 dispersed
Cmo01g01955 Cmo-Chr1:13903738 Cmo19g00661 Cmo-Chr19:7102099 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g563 . . . . . . . . Cmo19g00661 . . . . . . . Cpe15g00525 Bhi05g01201 . . . . . . Cla02g00543 . . . . . . . . . . . Csa07g00783 . Cme01g01469 . . . Bda14g00541 . . . . . . Cmo16g00372 . Cma19g00651 . Car19g00495 . . . . . . . . . . . . . . . . Lsi11g01072 . Chy01g00820 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013461 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00661 Cmo_Chr19 FPKM 40.872074 42.344841 33.944721 32.625435 22.464567 23.708513 24.977407 7.857058 9.651386 10.368357