Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00677 ATGGCGGTTTCCGGTAGCAATTCGACCCAGATTCATCCCTCCGACGAATCTTCCTCCAGTTCTTCCGAGAGTTCGCTATCCAACTTGAAAGTCTACGCCGCGATCGGCATAATTACTGCATGTGTGATTGCAGCGTCTGCTCTGATCTTCCTCTGTATCCGTAAAAATAGGGACTCGAGGAAGCACAAAATGCGGGTGAAGCATAGTTCCGGATTAATTCCGTTGTTCTCCAAGGAGATCGCCGAGATCAATGAGTCCGATCGGAGTGTGGATTGCGAGAAAGGGGAAGTCATTAGGGTTGAGAATAAGAAGGAAACTGAGTTCGAGACTGGAGTAGGTAAGAAGAGTCAAGAGATCGACGTGTCCGGCGGCGGTCGAAGCGATGTGCCGGTGGAGGATCAGAACTTAGGGTGGGGCCGGTGGTACACCTTGAAGGAACTCGAAATGGCAACCAATGGGTTTCTGGAAGAGAATGTGATCGGAGAAGGAGGCTACGGCATCGTGTACAGAGGCGTTTCGCCGGACGGCTCCGTCGTTGCCGTGAAGAATCTTCTTAACAACAAGGGTCAGGCAGAGAAAGAGTTCCAGGTTGAAGTAGAGGCCATTGGAAAAGTAAGGCACAAGAACTTGGTGGGTCTGATGGGTTATTGTGCAGAAGGAACACAGAGGATGCTTGTGTATGAATTTGTTGATAATGGCAACTTGGAGCAATGGTTACATGGTGATGTGGGGCCTGTTAGCCCTCTAACATGGGATATTAGGATGAAAATTGCCCTTGGAACAGCAAAAGGTTTGGCCTATTTGCACGAGGGTTTAGAACCGAAAGTTGTGCACCGTGATATAAAATCTAGCAACATTCTCTTAGATAGAAAATGGAATGCGAAAGTGTCTGATTTTGGACTGGCGAAGCTCTTACAACCCGAAGCGAGCTATGTAACTACTCGTGTAATGGGGACCTTTGGATATGTTTCCCCTGAGTATGCAAGTACAGGCATGCTTAACGAGGGGAGTGATGTATATAGTTTCGGAGTTCTACTTATGGAGATAATTACTGGCCGAAGCCCAATCGACTATTCCAGGCCTCCAGGAGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTAGCAAATCGACGTGGCGAAGAGGTTGTCGATCCGTTGATTGAGATTCCACCCCCCCCAAGAACTCTAAAGCGAATGTTGCTTGTTTGTCTACGCTGCATCGACTTGGATGCCAATAAAAGGCCAAAAATGGGGCAAATCGTTCATATGATAGAGGCAGACGACTTTCCTTATCGTTCGGAGCTTCGATCCGTGCGAGAGAAAGATAACCAGCCTTCTAGCTTAGACGTGCCGAGTAAACTTCCAATGAAGCATGCTGTTTTCGAAAATCTATTACGAGGCAGCGCGGTGTATATCGATTATTTGCCTAATGTTTGTGCTGTTGTATTGGTGTTTATGGTTCTCTACAAACTTAAGAAGTGA 1485 47.14 MAVSGSNSTQIHPSDESSSSSSESSLSNLKVYAAIGIITACVIAASALIFLCIRKNRDSRKHKMRVKHSSGLIPLFSKEIAEINESDRSVDCEKGEVIRVENKKETEFETGVGKKSQEIDVSGGGRSDVPVEDQNLGWGRWYTLKELEMATNGFLEENVIGEGGYGIVYRGVSPDGSVVAVKNLLNNKGQAEKEFQVEVEAIGKVRHKNLVGLMGYCAEGTQRMLVYEFVDNGNLEQWLHGDVGPVSPLTWDIRMKIALGTAKGLAYLHEGLEPKVVHRDIKSSNILLDRKWNAKVSDFGLAKLLQPEASYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEEVVDPLIEIPPPPRTLKRMLLVCLRCIDLDANKRPKMGQIVHMIEADDFPYRSELRSVREKDNQPSSLDVPSKLPMKHAVFENLLRGSAVYIDYLPNVCAVVLVFMVLYKLKK 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7201711 7205623 - CmoCh19G006770.1 Cmo19g00677 403837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00677 494 CDD STKc_IRAK 160 426 - -
Cmo19g00677 494 SMART serkin_6 154 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00677 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Cmo19g00677 494 PANTHER OS03G0227900 PROTEIN 16 442 - -
Cmo19g00677 494 PANTHER OS01G0323000 PROTEIN 16 442 - -
Cmo19g00677 494 Gene3D Phosphorylase Kinase; domain 1 131 229 - -
Cmo19g00677 494 Pfam Protein kinase domain 156 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00677 494 MobiDBLite consensus disorder prediction 1 23 - -
Cmo19g00677 494 ProSiteProfiles Protein kinase domain profile. 154 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g00677 494 SUPERFAMILY Protein kinase-like (PK-like) 138 431 IPR011009 -
Cmo19g00677 494 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524
Cmo19g00677 494 Gene3D Transferase(Phosphotransferase) domain 1 230 442 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00677 Cmo-Chr19:7201711 Cmo03g00987 Cmo-Chr3:7433788 2.44E-165 dispersed
Cmo11g01125 Cmo-Chr11:6343141 Cmo19g00677 Cmo-Chr19:7201711 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75103 PF00069 Pkinase 3.30E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00677 - - csv:101219201 848.966