Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00678 ATGACCGTCGGATCTTCGAGGAAGAGGCAGTACGTTCAACACTCTGCCTCCACCAGCCGTCACTCCTCTGTTCTTGCCGCCGCCGCCGACTGTTTTCCTTTATCAGATAAGTCCTCAACCGAAGTCTCGAAAAAGCCCCATACTCTCCCTCGTACTTCATCATTCTCCTCCATCGCCGCCTTCAACGACGCCTCTACTGCTGATATTGTCCTCCGTCTATATTTGGAGGTTGCTCCTTTTGATTCGTCTGGTTCTGAGTCTCCGGCGTCCTCCGATGTCCAGATTTATCTTCATTCCTGTGTTATTCGCCGATCGAAGTACTTTTCTGCTCTATTGTCGGACCGATGGCAGCCTAAGAAGGACAATGATTCAGATCCTTTGAGGTTGAGTTTCAGTGTTCCAGCGGCGCAGGGCTCAATGGATAGTCATTTGGCTGTTCTTGAGCTTCTTTACGTTGATGATATGTCGGAATCCATTGATAGTACGAAAGCTGCGTTGGATCTCCTCCCCGTTGCGCTTAAATTTCTTTTTGAGGATTGTGTTAAGTCCTGTGTTCGATTTCTGGAGGCCGTGCCGTGGACCGATGAGGAGGAAAAGAGAGTGATGGGATTGATTCCATTTCTGCAAGAGGAAGAATCGAGTGAGCTTCTTGCTAGGGTTTCGCCGGGCCGAAATGATTCTTGCGACGAAATGTTGCAGGGACTGATTTTGGCTGCTATTCATAATTATCCCAATATGGCTTTCGTGAAGGCATTCGTGGCGAAGCTTTTGAAGGATTTTTCATCAAGGGAGTCCGCGAAGAGAGTGCTGAAGAGGGCATTCGAGATGAGCTTGAAGGTCGTGAAAGAGTCTTTGGAGGAATATTCAAGCCCAAATTTTAGAGGAGATCATAACGAGACGGAGGCCATTCAAAGGCTCAATTTGCACACTGCAATGACAAATGCTAAGCATTTGTCGTGGGTGGTTGAGAGGATGATAGAATTGAGGGTGGCTGATGTTGCCGTGGATGAATGGAGTGAACAGGCTTCTTTCACTGCAGATTTACAACGAGCATTTCGAGACGATGGGTGGAGGGGCATTGTGCCAGGGTTTCCTTCAGTTCTTTTGCGATGTACCTCCAAGCTTGCCAATGCGGTTGCTGCTGGTAGCATTTTGGCCACCAAACAGGTTAGGAAGAAGTTCGTAAAGCATTGGCTTCCGGTTCTGCTTGTCAGCAAAGACCATTCACCTTTACTCTCCAGCAACAAGAACCTATGTATAGAGCTGGAGGAAACATTCCTGAGAATCATTTCCACACTTCCCTTGTCAGATGCACAGGAGTTGTTGCAGCAGTGTCTTAGCTTCACCAGAAACGTCGACGATTGCCCTCACCTGTTCAAAGCGTTTAACACCTGGTTTCGACGTGCAACACACCCGCCCCAGCTCGAGAAACTTTGA 1437 48.23 MTVGSSRKRQYVQHSASTSRHSSVLAAAADCFPLSDKSSTEVSKKPHTLPRTSSFSSIAAFNDASTADIVLRLYLEVAPFDSSGSESPASSDVQIYLHSCVIRRSKYFSALLSDRWQPKKDNDSDPLRLSFSVPAAQGSMDSHLAVLELLYVDDMSESIDSTKAALDLLPVALKFLFEDCVKSCVRFLEAVPWTDEEEKRVMGLIPFLQEEESSELLARVSPGRNDSCDEMLQGLILAAIHNYPNMAFVKAFVAKLLKDFSSRESAKRVLKRAFEMSLKVVKESLEEYSSPNFRGDHNETEAIQRLNLHTAMTNAKHLSWVVERMIELRVADVAVDEWSEQASFTADLQRAFRDDGWRGIVPGFPSVLLRCTSKLANAVAAGSILATKQVRKKFVKHWLPVLLVSKDHSPLLSSNKNLCIELEETFLRIISTLPLSDAQELLQQCLSFTRNVDDCPHLFKAFNTWFRRATHPPQLEKL 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7212772 7216149 + CmoCh19G006780.1 Cmo19g00678 403838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00678 478 PANTHER EXPRESSED PROTEIN 7 476 - -
Cmo19g00678 478 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 7 476 IPR038920 -
Cmo19g00678 478 Gene3D Potassium Channel Kv1.1; Chain A 35 221 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00678 - - - cmax:111471069 914.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01309 Cmo-Chr15:8995923 Cmo19g00678 Cmo-Chr19:7212772 7.11E-25 dispersed
Cmo03g00272 Cmo-Chr3:3980419 Cmo19g00678 Cmo-Chr19:7212772 2.60E-21 transposed
Cmo15g01374 Cmo-Chr15:9360200 Cmo19g00678 Cmo-Chr19:7212772 9.11E-06 transposed
Cmo11g01124 Cmo-Chr11:6335588 Cmo19g00678 Cmo-Chr19:7212772 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g588 . . . . . . . . Cmo19g00678 . . . . . Sed05g2319 Cpe04g00122 Cpe15g00538 Bhi05g01228 Tan02g0802 Cmetu01g1049 . Hepe02g0510 . . Cla02g00524 Cam02g0542 Cec02g0543 Cco02g0549 Clacu02g0543 Cmu02g0538 Cre02g0869 Cone12ag1150 Cone8ag1198 . . . . . Cme01g01424 Blo04g00510 . . Bda14g00551 Bpe15g00869 . Bma03g00550 . . . . . Cma19g00664 . Car19g00507 . . . . . . . . . . . . . . . . Lsi11g01101 . Chy01g00790 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007587 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00678 Cmo_Chr19 FPKM 0.719058 0.0 5.267745 4.316606 10.926523 11.283749 13.517344 1.686261 2.052133 1.73513