Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00680 ATGGCTGCGATCTTAGCTCGGAAATCACTTCTCGCTCTTCGTGCTCGTCAGCTTGCCATCTCTGGACAAGCATTGCAAGGTTCTCGTTTTCATGATCTACGGTCAAGTGCACACTTGTACAGTACCAAAAGAGAAGATGAAGAAAGAGAGCAGCTTGCCAAGGAGATGTCAAAGGATTGGAGTTCAATTTTTGAGCGTAGCATAAACACGTTATTTCTCACTGAAATGGTCCGGGGTTTGATGCTGACTCTTAAATACTTCTTTGAGAAAAAAGTCACTATCAATTATCCATTTGAGAAAGGCCCTCTAAGCCCTCGTTTTCGAGGTGAGCATGCCCTCCGAAGATATACAACTGGAGAAGAACGATGCATTGCATGTAAACTTTGTGAAGCTATTTGCCCTGCTCAAGCAATCACAATCGAAGCTGAGGAACGGGAAGATGGTAGCCGTAGGACCACAAGGTATGACATTGACATGACCAAATGCATCTACTGTGGGTTCTGTCAAGAGGCATGCCCTGTTGACGCCATTGTTGAAGGTCCCAACTTTGAGTTTGCCACAGAGACTCACGAGGAGCTTCTCTATGACAAAGAAAAGTTGCTCGAGAACGGAGACCGCTGGGAGACCGAGATTGCAGAGAACCTCAGATCTGAAAGTCTCTATCGCTGA 669 45.89 MAAILARKSLLALRARQLAISGQALQGSRFHDLRSSAHLYSTKREDEEREQLAKEMSKDWSSIFERSINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYTTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7220019 7223458 + CmoCh19G006800.1 Cmo19g00680 403840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00680 222 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 153 182 IPR017896 -
Cmo19g00680 222 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 114 143 IPR017896 -
Cmo19g00680 222 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 70 206 IPR010226 GO:0016020|GO:0016651|GO:0051539
Cmo19g00680 222 Pfam 4Fe-4S dicluster domain 122 176 IPR017896 -
Cmo19g00680 222 SUPERFAMILY 4Fe-4S ferredoxins 96 206 - -
Cmo19g00680 222 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 162 173 IPR017900 -
Cmo19g00680 222 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 123 134 IPR017900 -
Cmo19g00680 222 Gene3D - 96 221 - -
Cmo19g00680 222 PANTHER NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 1 222 - -
Cmo19g00680 222 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 1 222 IPR010226 GO:0016020|GO:0016651|GO:0051539
Cmo19g00680 222 TIGRFAM NuoI: NADH-quinone oxidoreductase, chain I 79 200 IPR010226 GO:0016020|GO:0016651|GO:0051539
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00680 K03941 NDUFS8; NADH dehydrogenase (ubiquinone) Fe-S protein 8 [EC:7.1.1.2] - csv:101219679 411.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00950 Cmo-Chr1:5864108 Cmo19g00680 Cmo-Chr19:7220019 1.63E-17 transposed
Cmo11g01122 Cmo-Chr11:6330373 Cmo19g00680 Cmo-Chr19:7220019 3.92E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g591 . . . . . . . . Cmo19g00680 . . . . . Sed04g3932 Cpe04g00120 Cpe15g00540 Bhi05g01230 Tan02g0799 Cmetu01g2454 . Hepe02g0508 . . Cla02g00522 Cam02g0540 . Cco02g0547 Clacu02g0541 Cmu02g0536 Cre02g0867 Cone12ag1151 Cone8ag1201 . . . . . Cme01g01422 . . . . Bpe15g00868 . . . . . . . Cma19g00666 . Car19g00509 . . . . . . . . . . . . . . . . Lsi11g01103 . Chy01g00788 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010764 0 1 0 0 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00680 Cmo_Chr19 FPKM 16.111408 18.302473 35.834736 32.800529 30.582127 29.25832 30.900867 50.953064 46.76712 44.903244