Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00684 ATGGTCACATTACTTACTTCTCTTTACATGCTTCTTATGAAAATTCCGAACAGCCAAATCTCCTCAAACTTAGCAATATCATCAATGGCTTCAATGTCGGCTCATGGGTCGGGTGTATGGACTGCAAAGCAAAACAAGGCGTTTGAGGAGGCTTTGGCAATGTATGATCAAGACAGGCCTGATCGATGGCTGAATGTTGCTAAGGCCATTGGTGGAAAAACTGAAGAGGAAGTGAAAAGGCATTACCAAGTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGCAAGGTTCCTTTTCCTTATCGAAGCTCAAGAGGCAGCTAA 324 43.21 MVTLLTSLYMLLMKIPNSQISSNLAISSMASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVEDVKHIESGKVPFPYRSSRGS 107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7253445 7254840 + CmoCh19G006840.1 Cmo19g00684 403844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00684 107 SUPERFAMILY Homeodomain-like 40 93 IPR009057 -
Cmo19g00684 107 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 30 105 IPR044636 GO:0003700
Cmo19g00684 107 Gene3D - 31 99 - -
Cmo19g00684 107 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Cmo19g00684 107 ProSiteProfiles SANT domain profile. 35 90 IPR017884 -
Cmo19g00684 107 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 30 105 - -
Cmo19g00684 107 CDD SANT 40 86 IPR001005 -
Cmo19g00684 107 ProSiteProfiles Myb-like domain profile. 38 86 IPR001005 -
Cmo19g00684 107 SMART sant 36 88 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00684 - - - csv:101220234 153.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01119 Cmo-Chr11:6304241 Cmo19g00684 Cmo-Chr19:7253445 1.31E-45 dispersed
Cmo19g00682 Cmo-Chr19:7242683 Cmo19g00684 Cmo-Chr19:7253445 2.71E-41 dispersed
Cmo19g00684 Cmo-Chr19:7253445 Cmo19g00686 Cmo-Chr19:7267047 1.05E-41 dispersed
Cmo19g00688 Cmo-Chr19:7277180 Cmo19g00684 Cmo-Chr19:7253445 3.35E-27 dispersed
Cmo19g00683 Cmo-Chr19:7249135 Cmo19g00684 Cmo-Chr19:7253445 5.71E-25 tandem
Cmo19g00684 Cmo-Chr19:7253445 Cmo19g00685 Cmo-Chr19:7259092 7.06E-44 tandem
Cmo11g01118 Cmo-Chr11:6295785 Cmo19g00684 Cmo-Chr19:7253445 4.21E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g603 . . Bda06g00933 . . . . Bma12g00512 Cmo19g00684 . . . . . . Cpe04g00117 Cpe15g00548 Bhi05g01236 Tan02g0793 Cmetu01g1593 . Hepe02g0502 . . Cla02g00512 Cam02g0522 Cec02g0526 Cco02g0533 Clacu02g0524 Cmu02g0521 Cre02g0854 . . . . . . . Cme01g01408 . Blo13g00551 . . . . . . . . . . Cma19g00673 . Car19g00514 . . . . . . . . . . . . . . . . Lsi11g01111 . Chy01g00779 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000218 6 6 3 6 4 5 7 4 5 6 5 5 7 7 7 9 5 4 8 4 6 3 11 1 3 6 7 11 9 3 173
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11633 PF00249 Myb_DNA-binding 1.30E-06 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00684 Cmo_Chr19 FPKM 8.650847 9.523002 4.66296 3.689933 22.525646 24.005455 23.349192 2.987149 2.948167 2.114269
Cmo19g00684 Cmo_Chr00 FPKM 1.690096 1.917848 0.0 3.744932 19.293633 17.033327 23.031677 2.843807 2.126777 0.0