Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00689 ATGAACAGAGCATTGCCGGAGATGTTGCAGTGTTTGAACACTGCCGGGGACTGTCCTGATAATCTCAGTGTTCTTGAGAGGCAGAGGGGTCGTTTGAAATTCCAGCAAGATCAGCTTTTGCAGCAGAGCTGTTTCAATAGGGTTGATTACGGCGGCGGATTTCCGCCGCCGGGGGTTGTTCCGGCGGATCACCTCACGGGGTTTCCGGGGTTCATGAGTGGCGGTGGCAGCGGTGGTGGGATGTCACTTGTTGAGATTGTAATGGGGGCAGTGAAGCCTGACCCTGGGGGGTTAGGAGGCAAGTTTGATCCCTCTCTGTTGTTGAATGCCACGGCTTATGAACTCAATTCTTCTCTCTCGAGAACCTCCAGCTGCCCGCCGGCAGTGACTCCGGCTGTGTCGGCCGCCAGAAGAGAGAGCTTCAAGAAAAGAAAAGCTGAGAAAGTTCACACCACCACCACCACAACCACCGCTGCCGCCGCCCCCACCAACAACAAGAACAAGGGGGACAAGAACAGCAAAGAGAAACGGATCAAAACAAGTTCAGAAGAAGAAGAGTTATCCAAAAACAACAACTCAAGCACCACAACAAACAACAACAGAGAAACATCAGCTGATACCTCAAAAGAAAACTCCAAAGCATCAGAGGTTCAAAAGCCTGGTTACATTCATGTCAGAGCAGGCCGTGGCCAAGCCACTGATAGCCACAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAAAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATTATAAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAATTATCGACTGTCAATCCAAGGTTGGAGTTCAATGTAGATGATCTCTTCACCAAAGAGGTTTTTCCCCAGGCGATCGGCGAAATGTCATCGGAGATGACAGATCCTTCTTCCTATTTACAATTCAATCCAAACAATCAACAAGTAGTTTCGTGTTCTGGATTAGAAATCGGAATCAATACCTCTGATATCGCACTTCGAAGATCATTCCCAGAAAATTTCGTGGATTCATCATGCCTCACCCAATTTCAAACCTCTTCGGGATGGGACATGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGCCGATCATCAAACGCCTTTTTATCTCATCCATATACAGGTACCATTGAAGGAGGTAACATAAAGATGGAAATGTGA 1257 46.7 MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVVPADHLTGFPGFMSGGGSGGGMSLVEIVMGAVKPDPGGLGGKFDPSLLLNATAYELNSSLSRTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNKGDKNSKEKRIKTSSEEEELSKNNNSSTTTNNNRETSADTSKENSKASEVQKPGYIHVRAGRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLSTVNPRLEFNVDDLFTKEVFPQAIGEMSSEMTDPSSYLQFNPNNQQVVSCSGLEIGINTSDIALRRSFPENFVDSSCLTQFQTSSGWDMDLQNLYNVGFDQGRSSNAFLSHPYTGTIEGGNIKMEM 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7294534 7297809 + CmoCh19G006890.1 Cmo19g00689 403849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00689 418 Gene3D - 228 303 IPR036638 GO:0046983
Cmo19g00689 418 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 23 398 IPR024097 GO:0006355
Cmo19g00689 418 SMART finulus 237 287 IPR011598 GO:0046983
Cmo19g00689 418 CDD bHLH_AtBPE_like 221 306 - -
Cmo19g00689 418 Pfam Helix-loop-helix DNA-binding domain 235 282 IPR011598 GO:0046983
Cmo19g00689 418 MobiDBLite consensus disorder prediction 187 205 - -
Cmo19g00689 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 229 299 IPR036638 GO:0046983
Cmo19g00689 418 MobiDBLite consensus disorder prediction 118 223 - -
Cmo19g00689 418 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 23 398 - -
Cmo19g00689 418 MobiDBLite consensus disorder prediction 151 167 - -
Cmo19g00689 418 MobiDBLite consensus disorder prediction 168 186 - -
Cmo19g00689 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 231 281 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00689 Cmo-Chr19:7294534 Cmo04g01641 Cmo-Chr4:8388080 2.91E-48 dispersed
Cmo11g01117 Cmo-Chr11:6266486 Cmo19g00689 Cmo-Chr19:7294534 0 wgd
Cmo19g00689 Cmo-Chr19:7294534 Cmo02g00400 Cmo-Chr2:2069636 6.63E-61 wgd
Cmo19g00689 Cmo-Chr19:7294534 Cmo20g00857 Cmo-Chr20:4313087 1.84E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11636 PF00010 HLH 1.10E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00689 - - cmo:103490373 587.415