Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo19g00689 | ATGAACAGAGCATTGCCGGAGATGTTGCAGTGTTTGAACACTGCCGGGGACTGTCCTGATAATCTCAGTGTTCTTGAGAGGCAGAGGGGTCGTTTGAAATTCCAGCAAGATCAGCTTTTGCAGCAGAGCTGTTTCAATAGGGTTGATTACGGCGGCGGATTTCCGCCGCCGGGGGTTGTTCCGGCGGATCACCTCACGGGGTTTCCGGGGTTCATGAGTGGCGGTGGCAGCGGTGGTGGGATGTCACTTGTTGAGATTGTAATGGGGGCAGTGAAGCCTGACCCTGGGGGGTTAGGAGGCAAGTTTGATCCCTCTCTGTTGTTGAATGCCACGGCTTATGAACTCAATTCTTCTCTCTCGAGAACCTCCAGCTGCCCGCCGGCAGTGACTCCGGCTGTGTCGGCCGCCAGAAGAGAGAGCTTCAAGAAAAGAAAAGCTGAGAAAGTTCACACCACCACCACCACAACCACCGCTGCCGCCGCCCCCACCAACAACAAGAACAAGGGGGACAAGAACAGCAAAGAGAAACGGATCAAAACAAGTTCAGAAGAAGAAGAGTTATCCAAAAACAACAACTCAAGCACCACAACAAACAACAACAGAGAAACATCAGCTGATACCTCAAAAGAAAACTCCAAAGCATCAGAGGTTCAAAAGCCTGGTTACATTCATGTCAGAGCAGGCCGTGGCCAAGCCACTGATAGCCACAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAAAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATTATAAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAATTATCGACTGTCAATCCAAGGTTGGAGTTCAATGTAGATGATCTCTTCACCAAAGAGGTTTTTCCCCAGGCGATCGGCGAAATGTCATCGGAGATGACAGATCCTTCTTCCTATTTACAATTCAATCCAAACAATCAACAAGTAGTTTCGTGTTCTGGATTAGAAATCGGAATCAATACCTCTGATATCGCACTTCGAAGATCATTCCCAGAAAATTTCGTGGATTCATCATGCCTCACCCAATTTCAAACCTCTTCGGGATGGGACATGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGCCGATCATCAAACGCCTTTTTATCTCATCCATATACAGGTACCATTGAAGGAGGTAACATAAAGATGGAAATGTGA | 1257 | 46.7 | MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVVPADHLTGFPGFMSGGGSGGGMSLVEIVMGAVKPDPGGLGGKFDPSLLLNATAYELNSSLSRTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNKGDKNSKEKRIKTSSEEEELSKNNNSSTTTNNNRETSADTSKENSKASEVQKPGYIHVRAGRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLSTVNPRLEFNVDDLFTKEVFPQAIGEMSSEMTDPSSYLQFNPNNQQVVSCSGLEIGINTSDIALRRSFPENFVDSSCLTQFQTSSGWDMDLQNLYNVGFDQGRSSNAFLSHPYTGTIEGGNIKMEM | 418 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 7294534 | 7297809 | + | CmoCh19G006890.1 | Cmo19g00689 | 403849 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo19g00689 | 418 | Gene3D | - | 228 | 303 | IPR036638 | GO:0046983 | |
Cmo19g00689 | 418 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 23 | 398 | IPR024097 | GO:0006355 | |
Cmo19g00689 | 418 | SMART | finulus | 237 | 287 | IPR011598 | GO:0046983 | |
Cmo19g00689 | 418 | CDD | bHLH_AtBPE_like | 221 | 306 | - | - | |
Cmo19g00689 | 418 | Pfam | Helix-loop-helix DNA-binding domain | 235 | 282 | IPR011598 | GO:0046983 | |
Cmo19g00689 | 418 | MobiDBLite | consensus disorder prediction | 187 | 205 | - | - | |
Cmo19g00689 | 418 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 229 | 299 | IPR036638 | GO:0046983 | |
Cmo19g00689 | 418 | MobiDBLite | consensus disorder prediction | 118 | 223 | - | - | |
Cmo19g00689 | 418 | PANTHER | TRANSCRIPTION FACTOR BHLH63-LIKE | 23 | 398 | - | - | |
Cmo19g00689 | 418 | MobiDBLite | consensus disorder prediction | 151 | 167 | - | - | |
Cmo19g00689 | 418 | MobiDBLite | consensus disorder prediction | 168 | 186 | - | - | |
Cmo19g00689 | 418 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 231 | 281 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo19g00689 | Cmo-Chr19:7294534 | Cmo04g01641 | Cmo-Chr4:8388080 | 2.91E-48 | dispersed | |
Cmo11g01117 | Cmo-Chr11:6266486 | Cmo19g00689 | Cmo-Chr19:7294534 | 0 | wgd | |
Cmo19g00689 | Cmo-Chr19:7294534 | Cmo02g00400 | Cmo-Chr2:2069636 | 6.63E-61 | wgd | |
Cmo19g00689 | Cmo-Chr19:7294534 | Cmo20g00857 | Cmo-Chr20:4313087 | 1.84E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11636 | PF00010 | HLH | 1.10E-06 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo19g00689 | - | - | cmo:103490373 | 587.415 |