Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00694 ATGGGCACTACAGTGGATTTATTGGTTAATTGTTATGATGATGTTGTGTTCGAGTATAGGAGAGGTCTATCTCGATACTACTCGGGAAAATCTAGGTCATTTGCTTGCATAGCCGATGTTCGATGTATAGAAGACTTGAAGAAACCGAAGCATCCAGAAGCTAAGAAAAGGAAGAAACAATCGGACTGCAAAGAAATTCACTCCGTGGAAAGCTTTCAAGCAGCCATGGGGAAGAACAAGAGGTTTAAGGACGGTGGCGAGAAGGGAGCCGCCGCCGGCGATCACTGCCCTTCCAAGGTTTTTGTCAAGAACTTGCCGTACTCGTTCGCCAACTCACAGCTTGAAGAAACATTCAGTGATGTTGGACCGGTCCGGCGGTGCTTCATGGTTACGCAGAAGGGTTCAACTGAGCATCGTGGTTACGGATTCGTGCAGTTTGCTGTAGCAGAAGATGCGAATCAAGCAATTCAGCAGAAGAATGGGCTGTCTATTGAAGGACGCAAAATTACTGTTAAACATGCAATGCATCGAGCTCCCCTTGAGCAGCGGCGGTCAAAAGAAAATCAAGGTACTGCATCTAAGTCAAAAACTAACAAGGAAGGAGATACTTCTGAAAGGGAAGAACAAACAACTAACGAGGATGGAGATACTTCTAAAAGGGAAGAACAAGCAACTAACGAGGATGGAGATACTTCTGAAAAGGAAGAACAAACAACTAACGAGGATGGAGATGTTTCTAAAAGGGAAGAACAAACAACTTTAAATTCTGAGGGGAGGAAAGAGAGACATTTGAATGCTCAGAAATTGGCTCCACTTTCTAGTTATCTAGAGGATAAAGAGGGTTCTTCAGGAAAGCAAAGGATTGCAAGGACTGTTGTAGTCGGTGGTCTTCTTAATGCTGATATGGCTGAAGATGTTCACCGCCAAGCTAGAGAAGTTGGTGCTGTATGCTCTATTGTTTATCCTCTTCCCAGAAAAGAAGTTGAACAGCATGGCCTTTTACGAGATGGATGCAAAATGGATGTTTCAGCTGTACTTTTTGCTAGTGTTAAGTCTGCACGTGCTGCTGTGACCATATTACATCAGAAAGAGATGCAAGGAGGTGTTGTGTGGGCCCGCCAACTGGGTGGGGAGGGGTCCAAAACTCAGAAATGGAAACTTATTGTCAGAAATCTTCCATTTCAGGCCAAAGAGAAAGAAATAAAGGATACCTTTTCATCTGCAGGATTTGTGTGGGACGTGATGGTGCCACATAGTTCAGACACAGGATTATCGAAGGGTTTTGCGTTTGTCAAATTTACATGCAAGCAGGATGCTGAAAATGTAATGTGGGTTTCGGGCACTACTAGGCACGAGGAAACTCCGATGGCAGGACAATGCCAATTTTCCTCGGGCGATGGGCATTTCACAAATGGGGAAGAGACTGAAAAAGACAGAGAAGGTAGCATTAGTAGTGATGATTTGGAAGTTGAAAATGCTGCTGTTCATAACAAATCTCAGCGCTCCGACAAAGATGGAAGTTCTTCAGAGGATTCGGAGAAAGAAGATGTTTCCTCGGAGATTGATTTTGAAGGAGAAGCAGAAATTTCAAGAAAAGTACTTGAAAATCTAATTGCATCTTCGGCTAAAGAAGCTCTTCCTTCTCTCATTGATGGTAACCCACCATCTAACGTGAACAAGGAGCCAGTTTTCGATTCATCGAAGAAGTCATCTGATATGTCTGATAAAGTATCAAATGGGCCCGAAAAGTTAAGTGAAAGCAAAACATCTATTCTTAAGCCAGTAGATGAAGAGGATTTGAAGAGAACAGTTTATATAGGCAATCTTCCATTTGATATTAATAATGAAGAAGTGAAACAGCGGTTTTCTGGATTCGGTGAAGTACTTTCCTTCGTACCAGTCCTTCATCAAGTTACAAAACGACCTAGAGGCACTGGTTTTCTCAAGTTTAAAACGGCTGATGCTGCTACTGCTGCTGTTTCGTCTGCGAATGTTGCATCTGGTGTCGGAATATTTCTGAAGGGCAGGCAATTGAAAGTATTGAATGCTCTGGATAAGAAATCAGCTAATGAAAAGGAATTGGAGAAGTCAAAAAATGACAACCTTGACCACCGAAATCTTAACCTTGCACAGGAAGGTATTATTCTCGAGGGAACTCCAGCTGCTGAGGGTGTTTCTGCTAGTGATATGATGAAACGTCAAAGGCTAGAAAAGAAACGAATGACTAAGCTTCAATCTCCGAATTTTCATGTTTCAAGAACTAGGCTCGTTATACACAATTTACCAAAATCAATGAAAGAAAAGGAACTTCAAAAACTTTGCATCGAAGCTGTTACCTCGCGAGCTACAAAGCAAAAACCTGTGATTCGCCAGATTAAATTCTTGAAGGATGTGAAGAAAGGAAAGGTCTTGACAAAAAATTACTCTTGTGGAGTTGCTTTCGTCGAGTTTTCTGAGCATCAGCACGCCCTTGTAGCCCTGCGAGTTCTCAACAACAATCCAGAAACTTTTGGCCCTGTGAATCGCCCGATCGTAGAATTCGCTGTAGACAATGTTCAGATGTTGAAGCTACGGAAAGCGAAGTTACAAGCTTCGTATCAGGACAATACTGCCAACGTTCCGAAATCACTGCATCGTAATGCTGATACAAATGCTGGGGATATCCATTCAAACAAGACGAACTCCAGAAAAAGGAAAGCAACAGGCGATAATCGTCCAGTGAAGGAGAAAAATCGCAACGAAAACAAAAATGGCGATCATGTATCCAATGATATGGCGATGGAAGAAAGTAGAGACAGAAAAAAGAAGAAAACGCGTCCAGAAAGTGGTAATAATACAAACGAGTCACTGAAACAAAAACCAGAAGGACGAAGATCAATGCCTGAAAAATCGAGCAAGAGATCGGCACCCATGGATACTGTTAAAACAAAAGCTTCTCAGGAGGCTGATGTACAACACAAAAAGAAGGCAAAACATCAAGTAGAGCAGCACCAGAGGAAGAGGGCAAAGAAAAACAAGTTACCAGTAGGACAGGACGCTGTTGATAAACTCGATAAACTTATCGAACAATATCGATCCAAGTTCTCGCAGAAGAGTTCGGATTCAGCCGATGGTGAAAAGAAAGGCTCTAAACAGGGCTCGCTTTTGATGGCCAAACCCAAGGCTCCGAGGCAAACCCTAGATTCTTACACTGTCAAACGCATCAACAAAACCATCAAAGATGGTTCCGTTTTGGCGTCTGTTTCTGATCTTGCGGAATTTTTCGGACTTTTGTTCTTAGCCGGCGATTGCGTGCTCATGAGGCCCCCCGAACCCTCGAAACCGTCGTATGTAGCAAAGATTGAGAAGATTGAGGCTGATTCTCGTGGGGCCAATGTGAAGGTCCATATTCGCTGGTATTACCGGCCGGAGGAATCAATTGGCGGTCGGAGACAGTTTCATGGGTCGAAGGAGTTGTTTCTCTCCGACCATTACGACGTTCAAAGTGCCGACACCATCGAGGGGAAGTGTACGGTTCATACATTTAAGAGTTATACCAAGCTTGATGCCGTCGGAAATGAAGATTATTTTTGCCGCTTCGACTATAATTCCACTACTGGAGCTTTCAATCCGGATCGAGTGGCTGTGTATTGCAAATGTGAGATGCCTTATAATCCCGACGACCTAATGGTTCAGTGCGAGAGCTGCACTGATTGGTTTCATCCCGCTTGTATAGAAATGACTGCAGAAGAAGCTAAAAAACTTGACCACTTCTTCTGTGAAAGCTGTTCTTCAGAGGATCAAAAGCTACAGAGTTCACAGTCTACATCTAAATTTGCAGAGACAAAGGTATTTCTCCTTGTTTGGGTGATAGAATGGGCAGTATTTCTCCTTGAAGAAGTCATATTGCTTGACTAG 3897 43.14 MGTTVDLLVNCYDDVVFEYRRGLSRYYSGKSRSFACIADVRCIEDLKKPKHPEAKKRKKQSDCKEIHSVESFQAAMGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFANSQLEETFSDVGPVRRCFMVTQKGSTEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKSKTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLNSEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGAVCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQLGGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTCKQDAENVMWVSGTTRHEETPMAGQCQFSSGDGHFTNGEETEKDREGSISSDDLEVENAAVHNKSQRSDKDGSSSEDSEKEDVSSEIDFEGEAEISRKVLENLIASSAKEALPSLIDGNPPSNVNKEPVFDSSKKSSDMSDKVSNGPEKLSESKTSILKPVDEEDLKRTVYIGNLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVASGVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSASDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKVLTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEFAVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGDNRPVKEKNRNENKNGDHVSNDMAMEESRDRKKKKTRPESGNNTNESLKQKPEGRRSMPEKSSKRSAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQDAVDKLDKLIEQYRSKFSQKSSDSADGEKKGSKQGSLLMAKPKAPRQTLDSYTVKRINKTIKDGSVLASVSDLAEFFGLLFLAGDCVLMRPPEPSKPSYVAKIEKIEADSRGANVKVHIRWYYRPEESIGGRRQFHGSKELFLSDHYDVQSADTIEGKCTVHTFKSYTKLDAVGNEDYFCRFDYNSTTGAFNPDRVAVYCKCEMPYNPDDLMVQCESCTDWFHPACIEMTAEEAKKLDHFFCESCSSEDQKLQSSQSTSKFAETKVFLLVWVIEWAVFLLEEVILLD 1298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7322454 7338761 + CmoCh19G006940.1 Cmo19g00694 403854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00694 1298 MobiDBLite consensus disorder prediction 547 588 - -
Cmo19g00694 1298 Gene3D - 1067 1202 IPR043151 -
Cmo19g00694 1298 CDD BAH_BAHCC1 1095 1226 - -
Cmo19g00694 1298 MobiDBLite consensus disorder prediction 565 582 - -
Cmo19g00694 1298 Coils Coil 987 1007 - -
Cmo19g00694 1298 MobiDBLite consensus disorder prediction 176 190 - -
Cmo19g00694 1298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 602 685 IPR000504 GO:0003723
Cmo19g00694 1298 MobiDBLite consensus disorder prediction 450 523 - -
Cmo19g00694 1298 MobiDBLite consensus disorder prediction 1027 1056 - -
Cmo19g00694 1298 MobiDBLite consensus disorder prediction 450 469 - -
Cmo19g00694 1298 MobiDBLite consensus disorder prediction 868 890 - -
Cmo19g00694 1298 CDD RRM3_RBM28_like 602 683 - -
Cmo19g00694 1298 Gene3D - 593 693 IPR012677 -
Cmo19g00694 1298 PANTHER RNA BINDING PROTEIN 571 863 - -
Cmo19g00694 1298 PANTHER RNA BINDING PROTEIN 80 450 - -
Cmo19g00694 1298 Gene3D - 371 451 IPR012677 -
Cmo19g00694 1298 Gene3D - 43 190 IPR012677 -
Cmo19g00694 1298 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 571 863 - -
Cmo19g00694 1298 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 80 450 - -
Cmo19g00694 1298 SUPERFAMILY RNA-binding domain, RBD 381 444 IPR035979 GO:0003676
Cmo19g00694 1298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Cmo19g00694 1298 SMART PHD_3 1210 1257 IPR001965 -
Cmo19g00694 1298 ProSitePatterns Zinc finger PHD-type signature. 1211 1256 IPR019786 -
Cmo19g00694 1298 SUPERFAMILY FYVE/PHD zinc finger 1200 1261 IPR011011 -
Cmo19g00694 1298 SMART BAH_4 1090 1206 IPR001025 GO:0003682
Cmo19g00694 1298 MobiDBLite consensus disorder prediction 868 1014 - -
Cmo19g00694 1298 SMART rrm1_1 99 172 IPR000504 GO:0003723
Cmo19g00694 1298 SMART rrm1_1 755 847 IPR000504 GO:0003723
Cmo19g00694 1298 SMART rrm1_1 603 681 IPR000504 GO:0003723
Cmo19g00694 1298 SMART rrm1_1 386 458 IPR000504 GO:0003723
Cmo19g00694 1298 ProSiteProfiles Zinc finger PHD-type profile. 1208 1259 IPR019787 -
Cmo19g00694 1298 MobiDBLite consensus disorder prediction 198 266 - -
Cmo19g00694 1298 SUPERFAMILY RNA-binding domain, RBD 98 371 IPR035979 GO:0003676
Cmo19g00694 1298 CDD RRM1_RBM28_like 100 177 - -
Cmo19g00694 1298 MobiDBLite consensus disorder prediction 951 970 - -
Cmo19g00694 1298 CDD RRM4_RBM28_like 754 851 - -
Cmo19g00694 1298 MobiDBLite consensus disorder prediction 891 942 - -
Cmo19g00694 1298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 754 867 IPR000504 GO:0003723
Cmo19g00694 1298 MobiDBLite consensus disorder prediction 470 514 - -
Cmo19g00694 1298 ProSiteProfiles BAH domain profile. 1090 1206 IPR001025 GO:0003682
Cmo19g00694 1298 SUPERFAMILY RNA-binding domain, RBD 602 832 IPR035979 GO:0003676
Cmo19g00694 1298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1203 1273 IPR013083 -
Cmo19g00694 1298 Gene3D - 753 848 IPR012677 -
Cmo19g00694 1298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 385 495 IPR000504 GO:0003723
Cmo19g00694 1298 Pfam BAH domain 1094 1205 IPR001025 GO:0003682
Cmo19g00694 1298 MobiDBLite consensus disorder prediction 176 285 - -
Cmo19g00694 1298 Pfam PHD-finger 1210 1258 IPR019787 -
Cmo19g00694 1298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 387 443 IPR000504 GO:0003723
Cmo19g00694 1298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 604 664 IPR000504 GO:0003723
Cmo19g00694 1298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 169 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00694 K14573 NOP4, RBM28; nucleolar protein 4 - csv:101217384 1413.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00443 Cmo-Chr13:5521054 Cmo19g00694 Cmo-Chr19:7322454 1.26E-96 dispersed
Cmo18g00548 Cmo-Chr18:4246808 Cmo19g00694 Cmo-Chr19:7322454 2.33E-98 dispersed
Cmo19g00694 Cmo-Chr19:7322454 Cmo14g00365 Cmo-Chr14:1694864 5.22E-08 dispersed
Cmo11g01115 Cmo-Chr11:6247050 Cmo19g00694 Cmo-Chr19:7322454 5.25E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g8 . . . . . Bpe12g00087 . . Cmo19g00694 . . . . . Sed05g2305 Cpe04g00115 Cpe15g00553 Bhi05g01787 Tan02g0774 Cmetu01g1478 . Hepe02g0245 . . Cla02g00500 Cam02g0510 Cec02g0510 Cco02g0517 Clacu02g0512 Cmu02g0508 Cre02g0841 Cone12ag1172 Cone8ag1219 . . . Csa07g00017 . Cme01g01365 Blo04g00526 Blo13g00542 Bda15g01076 Bda14g00569 Bpe15g00854 . Bma03g00563 Bma08g00787 . . . . . . Car19g00525 . . . . . . . . . . . . . . . . Lsi11g01125 . Chy01g00760 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11637 PF01426 BAH 2.40E-20 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00694 Cmo_Chr19 FPKM 37.210728 34.549355 29.865732 34.626358 29.785561 32.676552 35.428318 40.441113 43.86676 39.679626