Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00696 ATGGCGTCCGATTCTTCTCCAGTTAACTTCAATACAGGTCCTTCGTCGCCTGGTGATTCATTCTCTAGTCCCATCGGAAACACCGTCTCATCCTCAGGGGACGGTTATCGCCGTCGAAGCCGTCGCCGGTCATCTACTCCTTCGGAAATTGCTACGCCGCCGCGTCAACGATCCCGAATGGTCTCGTCGGAAACCACTCCGAAGGCTACGGAGTCGCGCTCGCGTCGGCAGGGAGGTGGGAGAAGAGCGTCCGGAGGTGGAGCGACCCCGATGGCTGCTACACCTTCATCGACGGATGATATTCCGCCGTCGACGGAACCTGGCGACGGCGACGACATGGATGAGGACCATCCGACCTTCGTATGGGGGACGAATATCAGTGTTGACGATGTGAAGGGAGCGATCATTCGGTTTTTGAGGCATTTCCGTGGTCGTCAGGCGTCGCAGTCTGAGGGGGATTTTCATACCGAGGGAAAATACGCGGAGGTAATCAAGCGGGTTCTTGAAATTGAAGGGGATTCGCTCGATGTGGATGCGCAGGATGTGTTCAATTACGATACGGATTTATACACGAAGATGGTGAGGTATCCTCTCGAGGTTCTCGCAATTTTTGACATTGTTCTAATGGAAATGGTGCCCCAAATCAACCCATTGTTCGAAAAACACATTCAAACTCGGATATTCAATCTCAGAACTTCTACTTCAATGAGAAACCTTAACCCATCTGACATTGAGAGGATGGTATCACTGAAGGGAATGATAATACGGTGTAGTTCCATAATTCCTGAGATCAGGGAGGCGATGTTTAGATGTCTCGTATGTGGATACTACACTGACCCAGTAGCTATTGAGAGAGGACAAATAACTGAACCCACTATATGCTTGAAGGAAGAATGCCAAGCAAGAAACTCCATGACATTGGTTCACAATCGATGCAGGTTTGCTGATAAGCAGATTGTACGGCTTCAGGAGACTCCTGATGAGATACCTGAAGGAGGGACACCTCATACTGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGGAAAGCCTGGTGACAGAGTTGAGGTCACTGGGATTTATAGGGCCATGAGTGTGAGAATTGGACCCACCCAGAGAACTGTAAAATCATTATTCAAGACTTATATTGACTGTCTTCATATAAAGAAGACTGATAAGTCAAGAATGGTGGCTGAAGACCCAACTGGAGCTGAGAACCGGTTGGGTGGAAATGTCGATGAGGTTTCGTTTGATGAAGCGAAGGTGGAAGAGTTGAAAGAACTCTCCAAAAAGCCTGATATATATGACAGACTAACCAGGTCATTGGCACCTAATATTTGGGAGCTTGATGATGTTAAGAAGGGCCTTCTTTGCCAGCTCTTCGGTGGGAGTGCTTTGAAATTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTCGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATACATACATAAACTATCTCCCCGCGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACAGCTTATGTCACCAAAGATCCTGAAACAGGGGAAACAGTACTGGAGAGTGGGGCCTTGGTTTTGAGTGACAGGGGCATATGCTGCATTGATGAATTTGATAAAATGTCTGAAAATGCAAGGAGCATGTTGCATGAGGTGATGGAGCAACAAACTGTTTCAATAGCGAAGGCTGGAATCATTGCTTCCCTTAATGCCAGAACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAACCCTCGCCTATCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTATCAAGGTTTGACTTGATTTATTTAATTCTGGATAAAGCTGATGAGCAAACAGATAGGCGCCTTGCTAAGCATATTGTCGCATTACACTTCGACAACCCAGAGGGCATTGAGCAGGATTTCATGGACCTTCATACCTTGACTTCATACATCAGCTATGCTAGGAAAAACATTCACCCAAAATTATCAGATGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGCTGAGGAGGAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTCATAACAGCTACTCCCAGACAGATTGAGAGTTTAATACGTTTAAGCGAAGCCCTTGCTCGAATACGAACCATTGACATGGATCTGATCACCACGGGAGTATCAGCAAGTGAAAGGATGCGAAGGGAGAGTTTATTATCGGCAACTCGCAACATAATCATGGAGAAAATGCAGCTCGGAGGGCCTTCCATCCGCCTGTCAGAGTTGCTGGATGAGCTGAGGAAGCAGAATCCTGACAATGAAGTCCATCTCAACAACCTTAGAAATGCGGTATCAACACTTGCAAGTGAGGGATTTGTAGCGATCCATGGTGATAGCATAAAGAGAATATCTTCGTCGGAGGAAGGTCTTGGAACAATGGGCGATACCCGAGGTGGTTGCTGTCCATCCATGGATCTGTTCCGCTCCGAGCCGATGCAGCTGGTGCAGCTCATCATTCCCATCGAGTCTGCGCATCGCACTATCTCCTACCTTGGTGATCTCGGCCTTCTCCAATTCAAAGATCTCAATGCCGAAAAAAGCCCGTTCCAGCGTACTTATGCTGCACAGATCAAAAGATGTGGAGAGATGGCACGCAAATTGAATTTTTTCAAGGAACAAATGTTGAAGGCTGGGTTGCCAAGCAAAAGCTCCATTTCACAAGTTGATATCAACATAGATGACCTTGAGGTCAAACTTGGTGAGCTTGAGGCAGAACTGATTGAGATAAATGCTAATAGTGAGAAGCTACAGCGTTCCTACAATGAGCTTGTGGAGTATAAGCTTGTTCTACAGAAGGCTGGTGACTTTTTCGGTGCAGCACAAAGCAGTGCCATAGAGCAGCAAAGAGAGTTTGAATCAAGACGAGTTGGTGGAGATTCAATAGAAGTTCCATTGTTGTTGGAACAAGAATCATCTGTGGATCAGTCAAAGCCAGTTAACTTGGGATTTCTTTCTGGTCTTGTTCCTCGGGGAAAATCTATGGCATTTGAGAGGATACTTTTTCGTGCTACCAGGGGTAATGTGTTTCTGAAGCAGGCTGTAGTTGAGGATCCTGTTCCAGATCCTATCTCTGGAGAGAAGGTTGAGAAAAACGTGTTTGTTGTTTTCTATTCTGGAGAAAGAGCAAAGAATAAGATTCTAAAAATATGTGAGGCGTTTGGAGCAAATCGATACCCTTTTACTGAGGACTTGGGGAAACAAGCCCAAATGATTGCCGAGGTTTCTGGAAAACTGGCTGAGCTGAAGACTACCATAGATGTAGGGCTGCTGCACCGGGCTAATCTATTGCAGACTATTGGAGAACATTTTGAAATTTGGAATCTCTTGAGGGGTGGGGTCCTGTTTTTGCAACAAAACAGATTCAGGAAGCACTCCAGCGAGCAGCATCTGATTCCAACTCCCAAGTTGGAGCAATTTTCCAGGGTGGCAAGGTATCAAGAAGCCAATCCTGGTGTATATACCATCGTCACGTTCCCATTTCTATTTGCTGTTATGTTTGGTGATTGGGGGCATGGAATATGTCTGTTACTTGCAACACTGTATTTTATATTGCGGGAAAAGAAACTTTCCTCTCAGAAGCTTGGAGATATCACTGAAATGGCCTTCGGTGGACGCTATGTCATTTTAATGATGTCGCTATTTTCAATATACACAGGTCTGATCTATAATGAGTTCTTCTCAGTCCCATTTGAACTGTTTGGTCGCTCAGCCTATGAATGTCGTAGTCCTGATTGCAGGTATATCAATGTAACCTTTAATGTACTCTGTCCATGTTTTTCTGTAATTCATGCTATGAGACTTGGTAATGATGGTCAGTCCTGTAATCCTCGCCATTGTAGTGATTCTACCAATGTGGGGTTGATAAAGGCGGGTTCTACGTATCCGTTTGGCTTGGATCCTGTATGGCATGGCACTCGAAGTGAGCTTCCATTTCTTAACTCTCTGAAAATGAAAATGTCTATCCTCCTTGGAGTTGCACAAATGAACCTTGGAATTATAATAAGCTATTTCAATGCTACATTTTTCAAGAACAGCATCAATATCTGGTTCCAATTCCTGCCACAAATGATATTTCTGAACAGCCTTTTCGGTTATCTTTCACTTCTCATCATCGTAAAGTGGTGCACTGGTTCGAACGCCGATCTGTACCACGTAATGATATACATGTTTCTCGGCCCCACTGAAGATCTGGCTGAAAATCAACTTTTTCCTGGGCAGAAAAATGTTCAGATTGTGCTGCTCTTACTGGCCCTTGTTGCTGTGCCATGGATGCTGCTTCCAAAGCCTTTTCTTTTGAAGAAACAGCACGAACAGAGGTTCCAAGGCCAGTCTTATGCGCCTCTTCCAAGTGGTGATGATTCCCTTGAGTTGGATTCGCATCACGATTCACATGGTCATGAGGAGTTCGAGTTCAGTGAGGTTTTTGTGCATCAACTTATACATACCATTGAATTTGTGCTTGGAGCAGTGTCAAACACAGCTTCCTATCTTCGTCTATGGGCTTTAAGTCTTGCGCACTCAGAGTTATCGAGCGTGTTTTATGACAAGGTTCTCGTTCTATCTGCGGGGTTCAACAACATTGTAATCTTAATAGTAGGCATCATCGTTTTCATTTTCGCTACCGTTGGTGTGTTGCTGTTGATGGAGACTTTAAGTGCTTTCCTTCACGCACTGCGTCTTCATTGGGTCGAGTTCCAAAACAAGTTCTACGAGGGAGACGGCTACAAATTCCTTCCTTTCTCATTTGCATTGCTAGATGAAGATGATGAATAA 4866 45.03 MASDSSPVNFNTGPSSPGDSFSSPIGNTVSSSGDGYRRRSRRRSSTPSEIATPPRQRSRMVSSETTPKATESRSRRQGGGRRASGGGATPMAATPSSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRGRQASQSEGDFHTEGKYAEVIKRVLEIEGDSLDVDAQDVFNYDTDLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAMFRCLVCGYYTDPVAIERGQITEPTICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRIGPTQRTVKSLFKTYIDCLHIKKTDKSRMVAEDPTGAENRLGGNVDEVSFDEAKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVALHFDNPEGIEQDFMDLHTLTSYISYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRTIDMDLITTGVSASERMRRESLLSATRNIIMEKMQLGGPSIRLSELLDELRKQNPDNEVHLNNLRNAVSTLASEGFVAIHGDSIKRISSSEEGLGTMGDTRGGCCPSMDLFRSEPMQLVQLIIPIESAHRTISYLGDLGLLQFKDLNAEKSPFQRTYAAQIKRCGEMARKLNFFKEQMLKAGLPSKSSISQVDINIDDLEVKLGELEAELIEINANSEKLQRSYNELVEYKLVLQKAGDFFGAAQSSAIEQQREFESRRVGGDSIEVPLLLEQESSVDQSKPVNLGFLSGLVPRGKSMAFERILFRATRGNVFLKQAVVEDPVPDPISGEKVEKNVFVVFYSGERAKNKILKICEAFGANRYPFTEDLGKQAQMIAEVSGKLAELKTTIDVGLLHRANLLQTIGEHFEIWNLLRGGVLFLQQNRFRKHSSEQHLIPTPKLEQFSRVARYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLYFILREKKLSSQKLGDITEMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFELFGRSAYECRSPDCRYINVTFNVLCPCFSVIHAMRLGNDGQSCNPRHCSDSTNVGLIKAGSTYPFGLDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIISYFNATFFKNSINIWFQFLPQMIFLNSLFGYLSLLIIVKWCTGSNADLYHVMIYMFLGPTEDLAENQLFPGQKNVQIVLLLLALVAVPWMLLPKPFLLKKQHEQRFQGQSYAPLPSGDDSLELDSHHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLVLSAGFNNIVILIVGIIVFIFATVGVLLLMETLSAFLHALRLHWVEFQNKFYEGDGYKFLPFSFALLDEDDE 1621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7351871 7367860 - CmoCh19G006960.1 Cmo19g00696 403856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00696 1621 PANTHER VACUOLAR PROTON ATPASES 1172 1276 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo19g00696 1621 Pfam MCM AAA-lid domain 661 728 IPR041562 -
Cmo19g00696 1621 Coils Coil 916 950 - -
Cmo19g00696 1621 Gene3D - 416 762 IPR027417 -
Cmo19g00696 1621 MobiDBLite consensus disorder prediction 46 68 - -
Cmo19g00696 1621 Pfam MCM P-loop domain 423 645 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo19g00696 1621 SUPERFAMILY Nucleic acid-binding proteins 152 386 IPR012340 -
Cmo19g00696 1621 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 309 321 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cmo19g00696 1621 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 258 271 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cmo19g00696 1621 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 597 614 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cmo19g00696 1621 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 451 462 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cmo19g00696 1621 ProSiteProfiles MCM family domain profile. 435 641 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo19g00696 1621 SMART mcm 232 750 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo19g00696 1621 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 1172 1276 - -
Cmo19g00696 1621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 730 IPR027417 -
Cmo19g00696 1621 PANTHER VACUOLAR PROTON ATPASES 829 1140 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo19g00696 1621 ProSitePatterns MCM family signature. 544 552 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cmo19g00696 1621 CDD MCM4 438 727 - -
Cmo19g00696 1621 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 829 1140 - -
Cmo19g00696 1621 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 1290 1621 - -
Cmo19g00696 1621 Pfam MCM N-terminal domain 134 232 IPR027925 -
Cmo19g00696 1621 Pfam V-type ATPase 116kDa subunit family 861 1140 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo19g00696 1621 Pfam V-type ATPase 116kDa subunit family 1173 1613 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo19g00696 1621 Pfam MCM OB domain 236 365 IPR033762 -
Cmo19g00696 1621 PRINTS Mini-chromosome maintenance (MCM) protein family signature 564 577 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo19g00696 1621 PRINTS Mini-chromosome maintenance (MCM) protein family signature 615 623 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo19g00696 1621 PRINTS Mini-chromosome maintenance (MCM) protein family signature 536 550 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo19g00696 1621 PRINTS Mini-chromosome maintenance (MCM) protein family signature 588 600 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo19g00696 1621 PRINTS Mini-chromosome maintenance (MCM) protein family signature 476 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo19g00696 1621 MobiDBLite consensus disorder prediction 1 119 - -
Cmo19g00696 1621 Gene3D - 236 375 IPR012340 -
Cmo19g00696 1621 PANTHER VACUOLAR PROTON ATPASES 1290 1621 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo19g00696 1621 Gene3D - 125 231 - -
Cmo19g00696 1621 MobiDBLite consensus disorder prediction 1 34 - -
Cmo19g00696 1621 Gene3D - 263 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00864 Cmo-Chr2:5255585 Cmo19g00696 Cmo-Chr19:7351871 3.35E-93 dispersed
Cmo03g01381 Cmo-Chr3:10126473 Cmo19g00696 Cmo-Chr19:7351871 1.13E-10 dispersed
Cmo06g00348 Cmo-Chr6:1687892 Cmo19g00696 Cmo-Chr19:7351871 1.36E-06 dispersed
Cmo07g00005 Cmo-Chr7:42857 Cmo19g00696 Cmo-Chr19:7351871 3.70E-95 dispersed
Cmo08g00461 Cmo-Chr8:2850680 Cmo19g00696 Cmo-Chr19:7351871 4.06E-103 dispersed
Cmo11g01111 Cmo-Chr11:6223719 Cmo19g00696 Cmo-Chr19:7351871 0 dispersed
Cmo17g01008 Cmo-Chr17:8664918 Cmo19g00696 Cmo-Chr19:7351871 1.01E-102 dispersed
Cmo19g00696 Cmo-Chr19:7351871 Cmo20g00495 Cmo-Chr20:2343070 0 dispersed
Cmo05g00283 Cmo-Chr5:1229737 Cmo19g00696 Cmo-Chr19:7351871 3.28E-25 transposed
Cmo11g01110 Cmo-Chr11:6215415 Cmo19g00696 Cmo-Chr19:7351871 3.29E-82 wgd
Cmo12g00383 Cmo-Chr12:2370897 Cmo19g00696 Cmo-Chr19:7351871 2.91E-97 wgd
Cmo19g00696 Cmo-Chr19:7351871 Cmo05g00282 Cmo-Chr5:1227643 5.73E-16 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00696 K02212 - csv:101211850 1461.82