Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00701 ATGGAAACCGAAGAAGATGATTCTTCGAAACACGAACAAAAATCTCCTCTGTATGTCGAAGATGGAATCTTGGATGTTAAGTGTGACGTTCATCGGGAGCTTCAGAGCAATGAAGAACATGAAGAACAGCATTGTGTGTTTAAGTCCTCCATTGTCGAAACGGAGTTTCCAGTTAATACGAGCGTTGAATCTTCACCGGCCGGAGATGCAATTATCGGGGATGAGAGTCTTGCGGCGGATACTTGTTTAGAGATGAAGAAGGATGTGGCGGAGGAGATAGAGATAGCGGAGGAGAAGGATTTTCGTAACGTTATTGAGGATGTGGCGGAAGATTCTATGAAGTTGGAGACGGCGTTATTGGAGCAAAGGGATTTCGATGATATGAAAGAGAATACAGGGGAGGAGGAGGAGGAGGAGAAGGCTGTGACTGAATTTGTGGATGGCGAGATGTTAAATGAAACGGTCTTGGTTGGTGTAGCTGAAAATCAGGTCGAGGGCGACGTTTCGATGGCGAATTTTCCAGAGGACACGGTCGGAGAAGGCTCGGGTGCAGTTGGCTGTGCAGAGACAACCGTGAAGACATGCCTGAGTGATGTTTTGGCTGAGGAAACGCTTGTAGATGGAGCTGATGCTTCCAATTTGGTGCATAAGACAGTGGAGGAAGAGAATGCTGATGACTCCGATGACTCGAAGGATACAGAGGTTCCAAAGCAAGAAAATTTTTCTTTGGAGGAAAGGGAATTAGGCATCCCGGTTCGGCTGGAAGAGAACTCTGAGTTAAAAGATAGTTTGGTAGATGAGGCTGTGGTGGAGGAGGGACCGGCGACAAATTTAGCGGATAGCACAACGGATGAGGTGGGGCTGCCACATTTTGCTGGGAAGATCGATGAGGCGGTAAATGTAGAAAATGCTGAAGACAAGGCTGCTGAGATGGACGGAATATGTATGGGAAACAAGGCTACCAATGTGGCGATGATGGAGAATTCGGCACACGAGACCCCAGAGATCAAGGCAGTAGACATAGCCGACTATGGTATCGAGGCGTTGAAGATCGAGAACGTGGAAGATAAGGAAGTGGGGGTTAAGGGATTGGGTTCGGCCGATGAGAGCGTTGAGCTTGGAAAGATTGAGAATATGGCAGGCGAGACTGCAGAGGCCGAGGGAGTGCAAGTGACAGACTACATCCCGGAAATGGTAAAATCGGAGAACGTGGAAGAAAACAAGACTGCACAAGTTGAGGAAATAGCTATGGCCGAAGAGACTGCAGAGGCCGACGACGACATGGTTTATTTGGTGGATGAAGGGATTGGGTCGGAGGAGACTGATGCAAACATGACATACTTGGTGGAGGAGACAGAAGCAGGAGAGGAGGCTGAGGAGATGGATATTACGGAGGAGGTCGATGAGGCAAATAAAGGTAGCAGTGGTGCGAAAAGGAAGCGTGGAAAGAATTCTAAAGCTCCAGCTAGAGCGCCTTCTAGGAAGAAGGTGGAAGAGGACGTTTGCTTTATTTGTTTTGATGGGGGTGACCTTGTACTCTGTGATCGCAGAGGTTGTCCCAAGGCATACCACCCTTCTTGTATTAATCGCGACGAGGCATTCTTCCGAGCCAAGGGTCGATGGAACTGTGGTTGGCATCTTTGTAGCAACTGTGAGAAGACTGCCCACTACATGTGTTACACATGTACATTTTCCTTGTGCAAGAGCTGCACAAAAAATGCTGTTATTTTATGTGTTAGAGGGAACAAAGGCTTCTGCGAGGCGTGCATGAGATTTGTTATGTTGATCGAAAAGAAGGAGCAGGGGAATACCGAAAAGGGCCAAATTGATTTTAATGACAAAAATAGCTGGGAATATCTTTTCAAGGAGTACTGGACAGAGATGAAGGGAAAACTTTCTCTAACTTTTGACGAACTTGTTCACGCAAAAAACCCGTGGAAAGGATCTGAGACGCTGACTAACAGACCCGATTCACCTAGTGAGCTATGCGATGTTGATGGAGGATCAGATTTGGATGTTTCTGAAAATGAAGAATCTGGTAGCTCTAAGAGAAAAAAAGCTAAGAAAAAGTCAAAATCTCATGCAAAGGAAATGAGTTCACCTAGTATGCCAGTTATACCTGATTCTCAAGGGCTATCCACGGATACCGATGTCGAGTGGGCATCTAAAGAGCTCTTGGAGTTCGTAATACACATGAAAAATGGCGATAAAACCGTTTTATCTCAGTTTGATGTTCAGGCTCTCTTATTAGAATATATTAAAAGAAATAAGCTTCGTGATCCTCGACGGAAAAGTCAGATCATTTGTGATTCAAGACTCGAGAATTTATTTGGAAAGCCACGCGTGGGACATTTTGAAATGTTGAAGCTCCTAGAGTCACACTTCCTCATCAAAGAAGATGCCCAGATAAATGACTTCCAAGCGAGTGTCGCCGATACCGAATCTAATCAGTTGGAGGCTGATGGGAACACTGATGCGTCGGGGAAGACTAAGAAAGAGAAGAAACGCAGGTATCGGAAAAAAGGTGAAGAGAGAGGAATGCAGAGTAACCTTGATGACTATGCAGCCATTGATACTCACAACATTTACTTGATTTACTTGAGACGTAATTTGGTGGAATATCTGATTGAAGACGAGGAGAGTTTTCACGACAAGGTTGTTGGTTCTTTTGTGAGGATACGAATATCGGGCAATGCACAAAAACAAGATTTATATCGGCTGGTTCAAGTTGTAGGTACAAGCAAAGCATCCGAGCCTTATAAAGTCGGTAAAAAGATGACGTATATCATGCTGGAGATCTTGAATTTGAATAAGACAGAAGTGATTTCAATCGATATTATCTCAAATCAAGAGTTCACAGAGGAGGAGTGCAAGCGTCTCAGGCAGAGCATCAAGTGTGGAATCCTTAACCGTTTGACTGTGGGTGACCTCCATGAGAGAGCAATGTCCCTTCAAGATGCTAGAGTAAAGGATTGGATGGAAACCGAGATAGTTCGACTAAGTCATCTTCGTGATCGAGCAAGCGAAAAAGGGCGACGAAAAGAGCTTAGGGAATGTGTCGAGAAACTACAGCTTTTGAAGACGCCGGAGGAGCGGCAGCGCAGACGAGAGGAAATACCAGAAATACATGCAGACCCTAATATGGATCCAAGCCATGAATCTGAAGATGAAGATGAAGCAGATGATAAGAGACAAGAAACCTATACGTCGTCGAGAGGCACGAGCTTTGGCAGGAGGACGAGGGAGCCGGTTTCTCCTGGAAAAGGAGTTTCAAATTTGAACGATTCCTGGAGCGCGACCAGGAACTTTTCAAACACGACTCGGGACTTGACCAGGAACTCGTCTGGTAAAGGCTTCTCGATCCAAGGCGACGATGCCATTGGTTCTGGTGAAATCATAAATGAAAATTCTTGGAGTCAAGGAAGAGATAGAGATGTTAAACAAACAAACAAGTGGGACAAGCAACAAGTTTCACCCAGTTCGGATATTGCTGCTAGGAATATCTCGTCCGGGGCAGCAGCAGCCGAGTTGTCTTCTGCATCTCACTCGGTGAATCCAGCAGCATCTCCATTGGTTGGAACTACACAGAATGCTGCTGCCATTGTTAATGAAACCGAGAAGATATGGCGTTATCAGGATCCGTCTGGGAAAGTTCAGGGACCGTTTTCGATGGTGCAGCTACGTAAATGGAGCAACACAGGCTATTTTCCTGCAGACTTGAAAGTATGGAGAGCCTCAGACAAGCAAGATGACTCCCTGCTTTTGACCGATGTCTTGGCTGGGAAGATCCCGAAGGACACTCCATTGACGAATAACAGCTTCCAAGCAAACACGCATGCTTCTTCATTTGTCGGGAAGCCTCAGGGAGGAGCCGTTTTGCAGTCAGGTATGGATGGTCAGAATACTAATCCGACTTCTTATGGCCAGTCGTCTGGAGGAAGATGGAAATCTGAAAATGAAGTTAGCCCTACGGGTAGACCTGCCTCGACTCCGGTAGAAGTCCCCAGGTACTCGGGAGACCGATGGTCTTCTGACCACGGTATTAAGAACTTCACAAGGCTTCCTTCTCCTACTCCCAGCTCAGGAGGAACAAAGGAGCAGCAGCAGCAGCAGCCATTTCAAGTGGCTGCATCGTTCTTGCACAATTCTTCACTTATGCAACGCTCTGAAAACGACTCGTTACGCTCGAATTCTGGCCTGAATTCAGCCGAAAAGGGCACGGGTTTAGGTCCTATGAATGTGCTTCAAAATCATCATTCTCAGCCAGTAAGACAATCACCTATCATGGGTGATGCTTCGGTCTATCCAGCTGCAGATATCAAAAGCATTAGCGCAAATCTTCATTGTTTAGTACAATCCATCAACAATCGTAATACTCCTATGGAAGCTCAAGGACATGGGTCTAGCGCTGTTCACAATGCACCATCTCTCAAACTTGAATCAAACCTTTCTTCTACCATGCCACCAGCACAAACTCTTCCGAGTCGTTGGGGGGAGATGCCCCCTGCTACGTCGTTCAGTGCAGGAGGTTCAACCACGAGTTTCTCCATGCCCGGTTTGACGAGTTTTCCATCCTCGGACCCTTGGCGATCTACGCCTCCTATTCCCAGTAACCTGCCGCACATTCAGTCTTCAACTCCAGCCAATCTACCTCGGGGAATGGGTGCTCCAGACGGCCAAAGTACCGTTCCACGACTGGGCTCGGAGACTCCGAACCCAGGCTGGGGATCAATGCCAAACATGGATCGAGGTTCAATTGCAGCACCACCTCCAAATGCTACTGCTGGTATGATGTGGGGAACTGCTCCTCCTCCTACAGGTACAAACCCAGGTTGGATTGCTCCAGGTCAAGGACCACCAACCGGAAACAACCTCCAAGGATGGTCCGCGCATGGCCCGGTGCCACCTCCAGTAAACGCTACTCCGGGATGGGTTGCCCCCAGCCATGGACCAATGCCACCTATGAACATGAATCCCAGTTGGCCCGTCCCGTACCCGAATCAGAACATGTGGGGTAACGAGCACGGTAGAAATGGGGATAGATTCTCGAATCAAAAGGACGGTGGCTCTCACGGCGGAGATCCGGGGAACGGAGGTAAATCATGGGGGATGCAACCATCTTATGGTGGTGGTGGTGGTGGGAGTTCTTGGTCTCCTTATAATAAAGCACAAAAACTGTGCAAATACCATGAAAGTGGACACTGCAAGAAAGGAGGTGCTTGTGATTACAGGCACAACTAG 5241 47.32 METEEDDSSKHEQKSPLYVEDGILDVKCDVHRELQSNEEHEEQHCVFKSSIVETEFPVNTSVESSPAGDAIIGDESLAADTCLEMKKDVAEEIEIAEEKDFRNVIEDVAEDSMKLETALLEQRDFDDMKENTGEEEEEEKAVTEFVDGEMLNETVLVGVAENQVEGDVSMANFPEDTVGEGSGAVGCAETTVKTCLSDVLAEETLVDGADASNLVHKTVEEENADDSDDSKDTEVPKQENFSLEERELGIPVRLEENSELKDSLVDEAVVEEGPATNLADSTTDEVGLPHFAGKIDEAVNVENAEDKAAEMDGICMGNKATNVAMMENSAHETPEIKAVDIADYGIEALKIENVEDKEVGVKGLGSADESVELGKIENMAGETAEAEGVQVTDYIPEMVKSENVEENKTAQVEEIAMAEETAEADDDMVYLVDEGIGSEETDANMTYLVEETEAGEEAEEMDITEEVDEANKGSSGAKRKRGKNSKAPARAPSRKKVEEDVCFICFDGGDLVLCDRRGCPKAYHPSCINRDEAFFRAKGRWNCGWHLCSNCEKTAHYMCYTCTFSLCKSCTKNAVILCVRGNKGFCEACMRFVMLIEKKEQGNTEKGQIDFNDKNSWEYLFKEYWTEMKGKLSLTFDELVHAKNPWKGSETLTNRPDSPSELCDVDGGSDLDVSENEESGSSKRKKAKKKSKSHAKEMSSPSMPVIPDSQGLSTDTDVEWASKELLEFVIHMKNGDKTVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLENLFGKPRVGHFEMLKLLESHFLIKEDAQINDFQASVADTESNQLEADGNTDASGKTKKEKKRRYRKKGEERGMQSNLDDYAAIDTHNIYLIYLRRNLVEYLIEDEESFHDKVVGSFVRIRISGNAQKQDLYRLVQVVGTSKASEPYKVGKKMTYIMLEILNLNKTEVISIDIISNQEFTEEECKRLRQSIKCGILNRLTVGDLHERAMSLQDARVKDWMETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRREEIPEIHADPNMDPSHESEDEDEADDKRQETYTSSRGTSFGRRTREPVSPGKGVSNLNDSWSATRNFSNTTRDLTRNSSGKGFSIQGDDAIGSGEIINENSWSQGRDRDVKQTNKWDKQQVSPSSDIAARNISSGAAAAELSSASHSVNPAASPLVGTTQNAAAIVNETEKIWRYQDPSGKVQGPFSMVQLRKWSNTGYFPADLKVWRASDKQDDSLLLTDVLAGKIPKDTPLTNNSFQANTHASSFVGKPQGGAVLQSGMDGQNTNPTSYGQSSGGRWKSENEVSPTGRPASTPVEVPRYSGDRWSSDHGIKNFTRLPSPTPSSGGTKEQQQQQPFQVAASFLHNSSLMQRSENDSLRSNSGLNSAEKGTGLGPMNVLQNHHSQPVRQSPIMGDASVYPAADIKSISANLHCLVQSINNRNTPMEAQGHGSSAVHNAPSLKLESNLSSTMPPAQTLPSRWGEMPPATSFSAGGSTTSFSMPGLTSFPSSDPWRSTPPIPSNLPHIQSSTPANLPRGMGAPDGQSTVPRLGSETPNPGWGSMPNMDRGSIAAPPPNATAGMMWGTAPPPTGTNPGWIAPGQGPPTGNNLQGWSAHGPVPPPVNATPGWVAPSHGPMPPMNMNPSWPVPYPNQNMWGNEHGRNGDRFSNQKDGGSHGGDPGNGGKSWGMQPSYGGGGGGSSWSPYNKAQKLCKYHESGHCKKGGACDYRHN 1746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7399900 7408891 - CmoCh19G007010.1 Cmo19g00701 403861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00701 1746 CDD PHD5_NSD 501 546 - -
Cmo19g00701 1746 SMART PHD_3 501 547 IPR001965 -
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 1030 1162 - -
Cmo19g00701 1746 CDD GYF 1206 1261 IPR003169 GO:0005515
Cmo19g00701 1746 ProSiteProfiles Plus3 domain profile. 856 989 IPR004343 GO:0003677
Cmo19g00701 1746 CDD SWIB-MDM2_like 720 795 - -
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 1413 1427 - -
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 1294 1326 - -
Cmo19g00701 1746 ProSiteProfiles Zinc finger C3H1-type profile. 1721 1746 IPR000571 GO:0046872
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 1536 1550 - -
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 1388 1404 - -
Cmo19g00701 1746 Pfam Plus-3 domain 862 964 IPR004343 GO:0003677
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 1087 1120 - -
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 1030 1050 - -
Cmo19g00701 1746 Coils Coil 401 421 - -
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 453 492 - -
Cmo19g00701 1746 Gene3D - 1208 1266 IPR035445 -
Cmo19g00701 1746 ProSiteProfiles GYF domain profile. 1206 1260 IPR003169 GO:0005515
Cmo19g00701 1746 SUPERFAMILY SWIB/MDM2 domain 715 796 IPR036885 -
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 1349 1372 - -
Cmo19g00701 1746 ProSiteProfiles Zinc finger PHD-type profile. 499 565 IPR019787 -
Cmo19g00701 1746 CDD Bbox1 547 572 - -
Cmo19g00701 1746 SUPERFAMILY FYVE/PHD zinc finger 495 546 IPR011011 -
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 647 713 - -
Cmo19g00701 1746 Pfam SWIB/MDM2 domain 722 795 IPR003121 -
Cmo19g00701 1746 Gene3D SWIB/MDM2 domain 710 804 IPR036885 -
Cmo19g00701 1746 ProSitePatterns Zinc finger PHD-type signature. 502 562 IPR019786 -
Cmo19g00701 1746 Gene3D - 857 987 IPR036128 GO:0003677
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 1388 1427 - -
Cmo19g00701 1746 SUPERFAMILY Plus3-like 857 987 IPR036128 GO:0003677
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 219 248 - -
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 1480 1595 - -
Cmo19g00701 1746 ProSiteProfiles SWIB/MDM2 domain profile. 714 797 IPR003121 -
Cmo19g00701 1746 SMART rtf1 856 966 IPR004343 GO:0003677
Cmo19g00701 1746 Pfam GYF domain 1209 1250 IPR003169 GO:0005515
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 1280 1372 - -
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 1505 1528 - -
Cmo19g00701 1746 SMART gyf_5 1207 1262 IPR003169 GO:0005515
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 814 845 - -
Cmo19g00701 1746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 489 592 IPR013083 -
Cmo19g00701 1746 SUPERFAMILY GYF domain 1195 1259 IPR035445 -
Cmo19g00701 1746 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 319 1746 - -
Cmo19g00701 1746 SMART swib_2 715 800 IPR019835 -
Cmo19g00701 1746 MobiDBLite consensus disorder prediction 1669 1720 - -
Cmo19g00701 1746 PANTHER UNCHARACTERIZED 319 1746 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00701 - - - csv:101218325 2509.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00824 Cmo-Chr4:4107981 Cmo19g00701 Cmo-Chr19:7399900 0 dispersed
Cmo16g00700 Cmo-Chr16:3472380 Cmo19g00701 Cmo-Chr19:7399900 0 dispersed
Cmo19g00701 Cmo-Chr19:7399900 Cmo19g01155 Cmo-Chr19:9720987 5.97E-12 dispersed
Cmo04g00954 Cmo-Chr4:4858850 Cmo19g00701 Cmo-Chr19:7399900 1.81E-81 transposed
Cmo11g01102 Cmo-Chr11:6152022 Cmo19g00701 Cmo-Chr19:7399900 0 transposed
Cmo14g02229 Cmo-Chr14:15806397 Cmo19g00701 Cmo-Chr19:7399900 1.45E-71 transposed
Cmo11g01100 Cmo-Chr11:6147534 Cmo19g00701 Cmo-Chr19:7399900 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11639 PF03126 Plus-3 2.80E-23 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00701 Cmo_Chr19 FPKM 0.923875 1.080807 2.111674 2.283511 3.092191 3.895268 3.063422 3.215886 2.858697 2.809037