Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00702 ATGAGTTCAGATAGCAGGAGTCGAAGCAGGAGCAGGAGCAGGAGCAGGAGCCCACTGGATCGTAAAATCCGGTCTGATCGTTTTTCATATCGTGATGCACCATACAGGAGAGAATCACATCGGGGTTTCAGTCGAGATAATCTTTGCAAGAACTGCAAGCGGCCTGGCCATTTTGCAAGAGAATGCCAAGATGTCGCAATTTGTCACAATTGTGGTCTCCCTGGGCATATTGCTTCCGAGTGCACGACAAAGTCGCTATGTTGGAACTGTCGAGAACCCGGTCACATGGCAAGTAGCTGCCCTAATGAAGGCATCTGCCACACCTGTGGCAAGGCAGGACATCGGGCCAGGGAATGCACGGCTCCTCCGCTCCCCCCTGGCGACTTGAGGCTTTGCAATAATTGCTATAAGCAAGGTCATATAGCAGCTGATTGTACTAACGAGAAGGCGTGCAACAATTGCAGGAAGACAGGCCATCTTGCTCGCGATTGTCCAAACGATCCTATTTGCAACTTGTGTAATGTATCAGGGCATGTGGCCAGACAGTGTCCGAAGTCCAACGTCCTCGGAGACCGAGTCGACCGAGGCAGTGGCGGTGGCAGTGTGCGTGGTGGTGCTGGTGGTTACCGGGATGTTGTGTGTAGGAAATGCCAGCAGCTTAGCCATATGAGTAGGGATTGCATGGGCCCTTTGATGATCTGCCATAACTGCGGGGGACGAGGTCACCTGGCATACGAATGCCCTTCTGGTCGGTTTATGGACCGTTATCCCCGGAGGTACTGA 783 52.87 MSSDSRSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESHRGFSRDNLCKNCKRPGHFARECQDVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRVDRGSGGGSVRGGAGGYRDVVCRKCQQLSHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7410137 7412180 - CmoCh19G007020.1 Cmo19g00702 403862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00702 260 ProSiteProfiles Zinc finger CCHC-type profile. 132 147 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 PANTHER OS10G0545300 PROTEIN 5 260 - -
Cmo19g00702 260 Gene3D - 84 104 - -
Cmo19g00702 260 ProSiteProfiles Zinc finger CCHC-type profile. 151 166 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 ProSiteProfiles Zinc finger CCHC-type profile. 87 102 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 Gene3D - 150 196 - -
Cmo19g00702 260 Gene3D - 105 149 - -
Cmo19g00702 260 ProSiteProfiles Zinc finger CCHC-type profile. 234 249 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 Gene3D - 208 251 - -
Cmo19g00702 260 PANTHER - 5 260 - -
Cmo19g00702 260 SUPERFAMILY Retrovirus zinc finger-like domains 127 167 IPR036875 GO:0003676|GO:0008270
Cmo19g00702 260 SUPERFAMILY Retrovirus zinc finger-like domains 205 251 IPR036875 GO:0003676|GO:0008270
Cmo19g00702 260 Gene3D - 5 83 - -
Cmo19g00702 260 ProSiteProfiles Zinc finger CCHC-type profile. 49 64 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 SMART c2hcfinal6 131 147 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 SMART c2hcfinal6 169 185 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 SMART c2hcfinal6 67 83 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 SMART c2hcfinal6 150 166 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 SMART c2hcfinal6 213 229 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 SMART c2hcfinal6 233 249 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 SMART c2hcfinal6 86 102 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 SMART c2hcfinal6 48 64 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 MobiDBLite consensus disorder prediction 1 31 - -
Cmo19g00702 260 Pfam Zinc knuckle 105 120 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 Pfam Zinc knuckle 169 185 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 Pfam Zinc knuckle 68 82 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 Pfam Zinc knuckle 150 166 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 Pfam Zinc knuckle 213 227 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 Pfam Zinc knuckle 87 102 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 Pfam Zinc knuckle 131 147 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 Pfam Zinc knuckle 233 249 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 Pfam Zinc knuckle 48 63 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 SUPERFAMILY Retrovirus zinc finger-like domains 66 103 IPR036875 GO:0003676|GO:0008270
Cmo19g00702 260 ProSiteProfiles Zinc finger CCHC-type profile. 170 185 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 ProSiteProfiles Zinc finger CCHC-type profile. 68 81 IPR001878 GO:0003676|GO:0008270
Cmo19g00702 260 SUPERFAMILY Retrovirus zinc finger-like domains 34 63 IPR036875 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00702 K09250 CNBP; cellular nucleic acid-binding protein - csv:101213305 501.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00702 Cmo-Chr19:7410137 Cmo16g00131 Cmo-Chr16:612380 2.20E-07 dispersed
Cmo11g01099 Cmo-Chr11:6142067 Cmo19g00702 Cmo-Chr19:7410137 5.21E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g39 . . . . . Bpe12g00094 . . Cmo19g00702 . . . . . . Cpe04g00102 Cpe15g00562 Bhi05g01259 . . . . . . Cla02g00487 Cam02g0496 Cec02g0497 Cco02g0502 Clacu02g0500 Cmu02g0495 Cre02g0828 . . . . . Csa07g00035 . Cme01g01346 Blo04g00539 Blo13g00534 Bda15g01066 Bda14g00579 Bpe15g00842 . Bma03g00573 Bma08g00782 . . . . Cma19g00691 . . . . . . . . . . . . . . . . . . . . Chy01g00746 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004531 3 4 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00702 Cmo_Chr19 FPKM 15.169925 14.483212 20.358412 20.903179 19.122038 21.656107 19.202108 3.596008 4.186102 3.84739