Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00704 ATGGGGACGGTTGCCGGAGAGGAGTTGATGAACTTGGAGAACATGCAGGGGATAAATGCCCGTGAAGAGAAAATTCTTGTATTAGTAAGGTTGAGACCTTTGAATGAGAAGGAGATTATGATGAATGAAGCAGTGGATTGGGAGTGCATCAATGATACTAGTATCTTGTACCGGAATACGTTACGGGAGGGGTCCACATTTCCAAGTGCCTATACTTTTGATAGAGTATTTGGAGGTGATTGCTCTACAAAGCAGGTGTACGAGGAAGGAGCCAAAGAAATTGCATTTTCTGTAGTCAGTGGTATCAACTCGAGTATTTTTGCATATGGTCAAACAAGCAGTGGAAAGACATACACCATGAACGGAATTCTTGAACATTCAGTGTCAGATATATTTGATTACATTAGAAAGCATGAAGAAAGAGCATTTGTTGTGAAGTTTTCAGCTATTGAGATATACAATGAAGCTGTTAGAGACCTCCTGAGCACAGATACTACTCCTCTCAGGCTGCTAGATGACCATGAGCGAGGGACTGTTGTGGAGAAAGTCACTGAGGAAACTTTGAGGGACTGGAACCATTTAAAGGAGCTCATTTCAATGTGTGAAGCTCAACGACGGATTGGAGAGACCTCGCTGAATGAGAAAAGTTCTAGATCTCATCAAATTATTAAATTGACAATTGAAAGTTCTGCTCGAGAGTTTTTAGGAAAAGACAATTCAACCACCCTTGCTGCTAGTGTGAATTTTATTGATTTAGCTGGGAGTGAACGTGCAGCTCAAGCATTATCAGCAGGGGCGAGATTGAAAGAAGGCTGCCACATAAATCGCAGTTTACTGACTCTCGGTACTGTCATTCGCAAATTAAGCAAAGGAAGAAATGGTCATATCAATTACAGAGATTCTAAGCTGACGCGAATATTGCAGCCCTGCTTAGGTGGCAATGCTAGAACAGCCGTCATCTGTACATTGAGCCCTGCTAGAACTCACGTTGAACAAACTAGAAACACTCTCTTGTTTGCTTGTTGTGCAAAAGAGGTGACTACAAAAGCACAAGTCAACGTGGTCATGTCTCAGAAGGCTTTGGTTAAGCATTTGCAGAAAGAGGTAGCCAGATTGGAGAGTGAGTTGAGGACCCCTGCCCCTGTTTCATCCAGTTCTGAATATTCAGCCTTACTTAAAAAGAAAGATCTACAAATAGAGAAGATGGCCAAGGAGATTAGAGAGCTCACAAAGCAAAGGGATCTCGCTCAATCCCGGATTGAAGATTTACTTCGTATGGTTGGGCACGATGATGTCGTGAGAAAGGATATCGAAAGTAGTTATTCCAAATTGCAAGCGAGGGATGCTTTAGAGGATGATGGTTCACCATCAGAAACTTCAAGTGTGGCTGATTTTCGTGATAGAGATATGGGTGTAAAATCCTTCAACAATCCTCATTATTATGATGGAGACAGTGATGATGGAAAGAGGTTTCTTGACTCTTACTCCGGTCACAGTCCAATGACAACAACCGCTCTTGCAATAGTCGAAGATTCCGATGACTGCAAGGAAGTTCAATGTATTGAAATGGGGGAGTCAATCAGGGACGATGGCTTGTCACCGCTTGCTGCTAATAACGGTGAATTTAGAGGAAATGGTCATGAAATGACATCAACCCCTGTGAAAGGGAATAGAGAAGCACATCAGATTCAAAATAATTCAGCAAATGATCAACCGGAGCAAAGACTCCATAATGTAAAAAGGACAGAAATTAATTCTATGTTCAGTCCTTACCGCGACCATGCATGTTCAAAGGTGACTGCTGATATGTCAAGCTCCAGAAGCTTGAAGCTAGCCAGAAGCTGGAGTTGTAGAGCCAATCTCTCGACTGATTTATCACCTGGTAGAGGAGAAACCACCCCTCCTCATGGATTTGACCAAAGATTTCCTGGAAGACCTGAAGGTTTTGAACGGAAACTCCCACAATTAGTCTTTGATGACGGCCTCCTGAGGCTTGATTCTCAGTCTTCTATAGGAAGTGCTCGGAGCATCAAAACTTCGGCAGATGAAGACGTTACTCGCTTAGACGCCTTTGTTGCCGGATTGAAGAAAATGACCAACTTAGAGTATGGGAAAGAACTTGCTGATGGACAGTTTCTGAAGGATGGCCACGAATTGGATCTCTTAAAGGCTTCAAATGGTGCTGGAGGGGGAGAGACATTGCAAGATGCTGCACTAGTCACATCCGATTGGAACCAAGAATTTCAGAGGCTGCGGAGGATGATAGTTGAACTTTGGCAAACTTGTAACGTCTCGATAGTCCACAGAACTTACTTTTTCTTGCTCTTCCAAGGTGATCCTACCGATTCCATTTACATGGAAGTGGAGATTAGGAGACTGACTTTTATGAAGCAATCATTTTATTACGGCAATGAAGCTATGGAAGATGGCCGGAAAGTTTCTTTTGCTTCAAGTGTGAGAGATCTTCGTCGTGAGAGAGAAACATTGAGTAAGCTAATGCGGAAACGATTCTCAGAAGAAGAGAGAAAGAGACTATTCCAGCAATGGGGAATCTTGTTGAATTCAAAACGCCGAAGGCTGCAGCTCATCAACTGCTTGTGGAGCGACTCGAAGAACATGAACCATGTAACAGAGAGTGCCGCCATTGTTGCGAAGCTTGTGAAGTTCGCTGAACAAGGACAGGCCCTCAAGGGGAACTTTGGTCTCAGCTTCATCACACCTCCACTGAAAAATAGAAGATCATATAGCTGGAAGAACAGTAGGAGTTCTCTTCCATGA 2778 43.2 MGTVAGEELMNLENMQGINAREEKILVLVRLRPLNEKEIMMNEAVDWECINDTSILYRNTLREGSTFPSAYTFDRVFGGDCSTKQVYEEGAKEIAFSVVSGINSSIFAYGQTSSGKTYTMNGILEHSVSDIFDYIRKHEERAFVVKFSAIEIYNEAVRDLLSTDTTPLRLLDDHERGTVVEKVTEETLRDWNHLKELISMCEAQRRIGETSLNEKSSRSHQIIKLTIESSAREFLGKDNSTTLAASVNFIDLAGSERAAQALSAGARLKEGCHINRSLLTLGTVIRKLSKGRNGHINYRDSKLTRILQPCLGGNARTAVICTLSPARTHVEQTRNTLLFACCAKEVTTKAQVNVVMSQKALVKHLQKEVARLESELRTPAPVSSSSEYSALLKKKDLQIEKMAKEIRELTKQRDLAQSRIEDLLRMVGHDDVVRKDIESSYSKLQARDALEDDGSPSETSSVADFRDRDMGVKSFNNPHYYDGDSDDGKRFLDSYSGHSPMTTTALAIVEDSDDCKEVQCIEMGESIRDDGLSPLAANNGEFRGNGHEMTSTPVKGNREAHQIQNNSANDQPEQRLHNVKRTEINSMFSPYRDHACSKVTADMSSSRSLKLARSWSCRANLSTDLSPGRGETTPPHGFDQRFPGRPEGFERKLPQLVFDDGLLRLDSQSSIGSARSIKTSADEDVTRLDAFVAGLKKMTNLEYGKELADGQFLKDGHELDLLKASNGAGGGETLQDAALVTSDWNQEFQRLRRMIVELWQTCNVSIVHRTYFFLLFQGDPTDSIYMEVEIRRLTFMKQSFYYGNEAMEDGRKVSFASSVRDLRRERETLSKLMRKRFSEEERKRLFQQWGILLNSKRRRLQLINCLWSDSKNMNHVTESAAIVAKLVKFAEQGQALKGNFGLSFITPPLKNRRSYSWKNSRSSLP 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7419246 7426212 + CmoCh19G007040.1 Cmo19g00704 403864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00704 925 Coils Coil 355 375 - -
Cmo19g00704 925 MobiDBLite consensus disorder prediction 446 470 - -
Cmo19g00704 925 CDD KISc_CENP_E 24 346 - -
Cmo19g00704 925 Coils Coil 392 426 - -
Cmo19g00704 925 SMART kinesin_4 22 354 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo19g00704 925 Gene3D Kinesin motor domain 16 377 IPR036961 -
Cmo19g00704 925 PANTHER CENTROMERE PROTEIN E 8 924 - -
Cmo19g00704 925 MobiDBLite consensus disorder prediction 625 646 - -
Cmo19g00704 925 PANTHER KINESIN-LIKE PROTEIN KIN-7F 8 924 - -
Cmo19g00704 925 Pfam Kinesin motor domain 30 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo19g00704 925 ProSitePatterns Kinesin motor domain signature. 245 256 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cmo19g00704 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 378 IPR027417 -
Cmo19g00704 925 Pfam Domain of unknown function (DUF3490) 747 906 IPR021881 -
Cmo19g00704 925 ProSiteProfiles Kinesin motor domain profile. 24 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo19g00704 925 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo19g00704 925 PRINTS Kinesin heavy chain signature 210 227 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo19g00704 925 PRINTS Kinesin heavy chain signature 246 264 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo19g00704 925 PRINTS Kinesin heavy chain signature 296 317 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00704 K11498 CENPE; centromeric protein E - csv:101213783 1569.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00793 Cmo-Chr4:3962338 Cmo19g00704 Cmo-Chr19:7419246 0 dispersed
Cmo12g00378 Cmo-Chr12:2338893 Cmo19g00704 Cmo-Chr19:7419246 0 dispersed
Cmo13g01049 Cmo-Chr13:8771988 Cmo19g00704 Cmo-Chr19:7419246 2.06E-41 dispersed
Cmo16g00659 Cmo-Chr16:3251367 Cmo19g00704 Cmo-Chr19:7419246 0 dispersed
Cmo18g00040 Cmo-Chr18:240276 Cmo19g00704 Cmo-Chr19:7419246 0 dispersed
Cmo11g01096 Cmo-Chr11:6120392 Cmo19g00704 Cmo-Chr19:7419246 0 wgd
Cmo19g00704 Cmo-Chr19:7419246 Cmo05g00291 Cmo-Chr5:1257711 9.16E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g46 Blo02g00649 . . Bda08g00962 . Bpe12g00095 . . Cmo19g00704 . . . . . . Cpe04g00100 Cpe15g00563 Bhi05g01255 . . . . . . Cla02g00484 Cam02g0492 Cec02g0493 Cco02g0498 Clacu02g0496 Cmu02g0491 Cre02g0824 Cone12ag1189 Cone8ag1236 . Cone10ag1095 . Csa07g00039 . Cme01g01338 Blo04g00541 Blo13g00533 Bda15g01063 Bda14g00581 Bpe15g00840 Bpe05g00313 Bma03g00574 . . . . . Cma19g00692 . Car19g00536 . . . . . . . . . . . . . . . . Lsi11g01139 . Chy01g00742 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004297 2 1 3 1 3 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo19g00704 Cmo_Chr19 FPKM 20.983181 25.45085 35.628273 32.535675 23.736151 27.513374 25.567326 18.018587 19.071806 16.674685